FC876416

Overview
NameFC876416
Unique NameFC876416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10356 contig Ccv1_Contig10356:1..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC3_TRAVI (Laccase-3 OS=Trametes villosa GN=LCC3 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.295e-22
Identity = 55/140 (39.29%), Postives = 85/140 (60.71%), Query Frame = 3
Query:  180 SPD--CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVV----IHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            +PD   +++++ G  G FPGP I  + GD   + + +KL  + ++    IHWHG+ Q  T WADG A ++QCPI  G+ +LY F+V D+ GTY+YH HL +Q   GL G L++ D  D +   +  D E  ++ L+DW+H
Sbjct:   37 APDGVARDTVLAG--GTFPGPLITGKKGDNFRINVVDKLVNQTMLTSTTIHWHGMFQHTTNWADGPAFVTQCPITTGDDFLYNFRVPDQTGTYWYHSHLALQYCDGLRGPLVIYDPHDPQAYLYDVDDESTVITLADWYH 174          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSI (Putative laccase-18 OS=Oryza sativa subsp. indica GN=LAC18 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.295e-22
Identity = 52/145 (35.86%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  189 CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDG-EFNLLLSDWWHRSVHEAEVGLSSGHY 617
            C  + +  +NG+FPGPT+    GDT+ V + N+L   G+ IHWHG+RQ+ + WADG   +++CPI+PG    YRF V  + GT ++H H+   R A + G+ I+   DG K PF     +  +++ +WW   + E +  +  G++
Sbjct:   47 CNTTKIYVVNGRFPGPTVDVTEGDTVVVHVINRL-PHGLTIHWHGVRQMRSCWADGAGYVTECPIHPGGEKTYRFNVTGQVGTLWWHAHVTCLR-ATINGAFIIRPRDG-KYPFPTPAKDVPIIIGEWWELDLIELDRRMLDGNF 188          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC15_ARATH (Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.295e-22
Identity = 54/150 (36.00%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  147 HYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYR--FKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVHE 587
            HY + V  + ++  C    ++ +N QFPGP I+   GDTI V + N+  +E + +HWHG+ Q   PW+DG   I+QCPI PG  +LY+  F ++   T ++H H    R A ++G + V     +  PF   D E  ++L +WW R V E
Sbjct:   23 HYTFTVREVPYTKLCSTKAILTVNSQFPGPIIKVHKGDTIYVNVQNRA-SENITMHWHGVEQPRNPWSDGPEYITQCPIRPGSDFLYKVIFSIEDT-TVWWHAHSSWTR-ATVHGLIFVYPRPPQILPFPKADHEVPIILGEWWKRDVRE 169          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC10_ARATH (Laccase-10 OS=Arabidopsis thaliana GN=LAC10 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.295e-22
Identity = 61/160 (38.12%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   96 ILMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWW 569
            +L     F        R Y + V     +  C    ++ +NG+FPGPTI A   DTI V + N +    V IHWHGIRQL T WADG A I+QCPI PG +Y+Y F V  + GT ++H H+   R A ++G++++    G   PF     E  ++L +WW
Sbjct:    9 VLFALLAFPACVHGAIRKYTFNVVTKQVTRICSTKQIVTVNGKFPGPTIYANEDDTILVNVVNNV-KYNVSIHWHGIRQLRTGWADGPAYITQCPIKPGHSYVYNFTVTGQRGTLWWHAHVLWLR-ATVHGAIVILPKLGLPYPFPKPHREEVIILGEWW 166          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC5_TRAVI (Laccase-5 OS=Trametes villosa GN=LCC5 PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.998e-22
Identity = 57/138 (41.30%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  180 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            +PD      +   G FPGP I    GD   +     LTN+   +   IHWHGI Q GT WADG A ++QCPI  G ++LY F V D+AGT++YH HL  Q   GL G L+V D  D     +  D +  ++ L+DW+H
Sbjct:   39 TPDGITRAAVLAGGVFPGPLITGNKGDEFQINVIDNLTNETMLKSTTIHWHGIFQAGTNWADGAAFVNQCPIATGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDPDDPNASLYDVDDDTTVITLADWYH 176          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC6_ARATH (Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.678e-22
Identity = 58/159 (36.48%), Postives = 94/159 (59.12%), Query Frame = 3
Query:  132 GSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV----DVADGEKEPFHYDGEFNLLLSDWWHRSVHEAE 593
            G+ TR Y+++V+ +  +  C+ + ++ +N +FPGP I A+  D I +++ N +      IHWHGI+Q  + W DG + I+QCPI  G+++ Y FKV  + GT+ +H H    R A +YG LIV     V    K+PF+   E  +LL ++W ++V E E
Sbjct:   28 GAATRFYQFKVQTIRLTRLCQTNEIVTVNKKFPGPAISAQEDDRIVIKVIN-MTPYNTTIHWHGIKQKRSCWYDGPSYITQCPIQSGQSFTYNFKVAQQKGTFLWHAHFSWLR-ATVYGPLIVYPKASVPYPFKKPFN---EHTILLGEYWLKNVVELE 181          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC8_ORYSJ (Laccase-8 OS=Oryza sativa subsp. japonica GN=LAC8 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 8.722e-22
Identity = 56/152 (36.84%), Postives = 82/152 (53.95%), Query Frame = 3
Query:  189 CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEK-----EPFHYDGEFNLLLSDWWHRSVHEAEVGLSSGHYVGL 626
            C  S++   N Q PGPTI    GDT+ V   N      + +HWHG+ QL + W DG   I+QCPI P   + YRF +  + GT ++H H  + R A +YG+LI+   +G       EP+    E  +LL +WW+R+V + E   + G+  GL
Sbjct:   39 CMNSVIYTANQQLPGPTIEVTEGDTLVVHAVNDS-PYPLSLHWHGVYQLRSGWNDGANKITQCPIQPSGNFTYRFNITGQEGTLWWHAHSSLLR-ATIYGALIIKPRNGPSGYPFPEPYE---EIPILLGEWWNRNVDDVE---NDGYLTGL 182          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: FET3_CANAL (Iron transport multicopper oxidase FET3 OS=Candida albicans GN=FET3 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.722e-22
Identity = 52/125 (41.60%), Postives = 72/125 (57.60%), Query Frame = 3
Query:  204 VMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHR 575
            ++G N  +P PT+R + GD + + L N        +H+HG+   G    DG   ++QCPI PGETYLY F V D+ GTY+YH H G Q   G+ G  I++  D    P+HYD E  L LSD +H+
Sbjct:   45 MIGFNDSWPLPTLRVKKGDRVQLYLINGFDNLNTTLHFHGLFVRGANQMDGPEMVTQCPIPPGETYLYNFTVTDQVGTYWYHSHTGGQYGDGMRGVFIIEDDD---FPYHYDEEVVLTLSDHYHK 166          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: SKU5_ARATH (Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.139e-21
Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  150 YKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHY-DGEFNLLLSDWWHRSVHEAEVGLSSGHYVGL 626
            Y +EV Y+  SP      V+ ING+FPGPTI     + + V + NKL  EG+++HW+GI+Q    W DG    + CPI P   + Y F+V D+ G++FY   L  QR++G +GS +V+       PF   DG+  + + DW+ R+       L  G  +G+
Sbjct:   27 YNFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNENLVVNVRNKL-DEGLLLHWNGIQQRRVSWQDGVLG-TNCPIPPKWNWTYEFQVKDQIGSFFYFPSLHFQRASGGFGSFVVNPRAIIPVPFSTPDGDITVTIGDWYIRNHTALRKALDDGKDLGM 185          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSJ (Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC18 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.139e-21
Identity = 51/145 (35.17%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  189 CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDG-EFNLLLSDWWHRSVHEAEVGLSSGHY 617
            C  + +  +NG+FPGPT+    GDT+ V + N+L   G+ IHWHG+RQ+ + WADG   +++CPI+PG    YRF V  + GT ++H H+   R A + G+ I+   +G K PF     +  +++ +WW   + E +  +  G++
Sbjct:   47 CNTTKIYVVNGRFPGPTVDVTEGDTVVVHVINRL-PHGLTIHWHGVRQMRSCWADGAGYVTECPIHPGGEKTYRFNVTGQVGTLWWHAHVTCLR-ATINGAFIIRPRNG-KYPFLTPAKDVPIIIGEWWELDLIELDRRMLDGNF 188          
The following BLAST results are available for this feature:
BLAST of FC876416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LAC3_TRAVI2.295e-2239.29Laccase-3 OS=Trametes villosa GN=LCC3 PE=3 SV=1[more]
LAC18_ORYSI2.295e-2235.86Putative laccase-18 OS=Oryza sativa subsp. indica ... [more]
LAC15_ARATH2.295e-2236.00Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV... [more]
LAC10_ARATH2.295e-2238.13Laccase-10 OS=Arabidopsis thaliana GN=LAC10 PE=2 S... [more]
LAC5_TRAVI2.998e-2241.30Laccase-5 OS=Trametes villosa GN=LCC5 PE=3 SV=2[more]
LAC6_ARATH6.678e-2236.48Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=... [more]
LAC8_ORYSJ8.722e-2236.84Laccase-8 OS=Oryza sativa subsp. japonica GN=LAC8 ... [more]
FET3_CANAL8.722e-2241.60Iron transport multicopper oxidase FET3 OS=Candida... [more]
SKU5_ARATH1.139e-2136.02Monocopper oxidase-like protein SKU5 OS=Arabidopsi... [more]
LAC18_ORYSJ1.139e-2135.17Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC1... [more]

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Properties
Property NameValue
Genbank descriptionC32004E07EF DevOvary1 Citrus clementina cDNA clone C32004E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876416 ID=FC876416; Name=FC876416; organism=Citrus clementina; type=EST; length=632bp
GGATCTTTCACCTTCTTTCTTACTCTTCATTAATAGTTGGATAGAAAAAA
ATGGGGTTAGGTTTGAGACATGTTGCTGTTGTTGTCACTTGTTGGATACT
AATGTTGTGTTCAGTTTTTGAGACCTCGTACGGTTCAAAAACCAGACACT
ATAAGTGGGAAGTAGAGTACATGTTTTGGTCCCCGGATTGCAAAGAAAGC
ATAGTGATGGGGATCAACGGTCAGTTTCCGGGGCCGACGATCCGAGCCAG
GGCCGGCGACACGATCGCCGTCGAGCTCACTAACAAGCTCTATACTGAAG
GAGTTGTGATTCATTGGCACGGAATCAGACAGCTCGGCACTCCATGGGCT
GATGGCACTGCTTCCATCTCCCAGTGTCCTATTAACCCCGGAGAAACCTA
TCTTTACAGATTCAAAGTTGACAAGGCAGGAACGTACTTTTACCATGGAC
ACTTAGGGATGCAAAGATCAGCAGGTCTGTACGGATCTCTGATTGTGGAC
GTGGCAGACGGAGAGAAAGAGCCATTCCATTATGATGGGGAGTTCAACTT
GTTGTTAAGTGATTGGTGGCACAGAAGTGTCCATGAAGCAGAGGTCGGCC
TCTCCTCAGGCCATTACGTTGGATTGGTGAGC
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