FC876416

Overview
NameFC876416
Unique NameFC876416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: COPA2_PSESM (Copper resistance protein A homolog OS=Pseudomonas syringae pv. tomato GN=copA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.139e-21
Identity = 54/120 (45.00%), Postives = 71/120 (59.17%), Query Frame = 3
Query:  207 MGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDW 566
            M ING  PGP +R R GDT+ + + N+L  E   IHWHGI        DG   +S   I P   Y+YRFKV + GTY+YH H G Q  +G+YG L++D    E EPF Y+ E  ++L+DW
Sbjct:   66 MTINGGIPGPLLRWREGDTVTLRVKNRL-DETTSIHWHGIILPAN--MDGVPGLSFDGIAPDGMYVYRFKVRQHGTYWYHSHSGFQEQSGVYGPLVIDAK--EPEPFTYEREHVVMLTDW 180          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC1_TRAVI (Laccase-1 OS=Trametes villosa GN=LCC1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.488e-21
Identity = 57/138 (41.30%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  180 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            SPD      + +NG  PGP I    GD   +     LTN    +   IHWHG  Q GT WADG A I+QCPI+ G ++LY F+V D+AGT++YH HL  Q   GL G  +V D  D   + +  D +  ++ L DW+H
Sbjct:   37 SPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMVKSTSIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVDNDDTVITLVDWYH 174          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC1_AGABI (Laccase-1 OS=Agaricus bisporus GN=lcc1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.538e-21
Identity = 59/165 (35.76%), Postives = 92/165 (55.76%), Query Frame = 3
Query:   99 LMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYT----EGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            L+L +   +S  +KTR + +++     +PD  E   + ING+FPG  I+   GD++ + L NKL +      V IHWHG  Q  T   DG + ++QCP  P  T+ Y F V +++GT++YH HL  Q   GL G+ IV D  D  +  +  D E  ++ L++W+H
Sbjct:    7 LVLVAACISSVVAKTRTFDFDLVNTRLAPDGFERDTVVINGEFPGTLIQVNKGDSVRIPLHNKLTSPTMRRSVSIHWHGFFQARTSGQDGPSFVNQCPQPPNTTFTYEFSVAEQSGTFWYHSHLSTQYCDGLRGAFIVYDPRDPLRHLYDVDDESTVITLAEWYH 171          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC2_TRAVE (Laccase-2 OS=Trametes versicolor GN=LCC2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.329e-21
Identity = 58/140 (41.43%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  180 SPD--CKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            SPD   +++IV  +NG  P P I  + GD   +     LTN    +   IHWHG  Q GT WADG A ++QCPI  G ++LY F V D+AGT++YH HL  Q   GL G  +V D  D     +  D E  ++ L+DW+H
Sbjct:   36 SPDGFLRDAIV--VNGVVPSPLITGKKGDRFQLNVDDTLTNHSMLKSTSIHWHGFFQAGTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPKDPHASRYDVDNESTVITLTDWYH 173          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC3_THACU (Laccase-3 OS=Thanatephorus cucumeris GN=LCC3 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.653e-21
Identity = 60/167 (35.93%), Postives = 89/167 (53.29%), Query Frame = 3
Query:   99 LMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVV----IHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFN-LLLSDWWHRS 578
            L+  S+F ++  ++T  Y  ++     +PD  E     +NG +PGP I A  GDT+ V++ NKL    +     IHWHG+ Q      DG A ++QCPI P  +Y Y   + D+ GTY+YH HL  Q   GL G L++ D  D  +  +  D E   L++ DW+H S
Sbjct:    7 LVSVSLFVSAVLARTVEYNLKISNGKIAPDGVERDATLVNGGYPGPLIFANKGDTLKVKVQNKLTNPDMYRTTSIHWHGLLQHRNADDDGPAFVTQCPIVPQASYTYTMPLGDQTGTYWYHSHLSSQYVDGLRGPLVIYDPKDPHRRLYDIDDEKTVLIIGDWYHTS 173          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC2_TRAVI (Laccase-2 OS=Trametes villosa GN=LCC2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.259e-20
Identity = 57/140 (40.71%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  180 SPD--CKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            SPD   +++IV  +NG  P P I  + GD   +     LTN    +   IHWHG  Q GT WA+G A ++QCPI  G ++LY F V D+AGT++YH HL  Q   GL G  +V D  D     +  D E  ++ L+DW+H
Sbjct:   36 SPDGFLRDAIV--VNGVVPSPLITGKKGDRFQLNVVDTLTNHSMLKSTSIHWHGFFQAGTNWAEGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPKDPHASRYDVDNESTVITLTDWYH 173          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC1_TRAHI (Laccase OS=Trametes hirsuta PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.259e-20
Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 3
Query:  180 SPDCKESIVMGINGQFPGPTIRARAGDTIAVE----LTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            SPD      + +N   PGP +    GD   +     LTN    +   IHWHG  Q GT WADG A ++QCPI+ G ++LY F+V D+AGT++YH HL  Q   GL G  +V D  D     +  D +  ++ L+DW+H
Sbjct:   37 SPDGFARQAVVVNNVTPGPLVAGNKGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPAFVNQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASLYDVDNDDTVITLADWYH 174          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC1_THACU (Laccase-1 OS=Thanatephorus cucumeris GN=LCC1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.645e-20
Identity = 59/167 (35.33%), Postives = 90/167 (53.89%), Query Frame = 3
Query:   99 LMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVV----IHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFN-LLLSDWWHRS 578
            L+  S+F ++  ++T  Y  ++     +PD  +     +NG +PGP I A  GDT+ V++ NKL    +     IHWHG+ Q      DG + ++QCPI P E+Y Y   + D+ GTY+YH HL  Q   GL G L++ D  D  +  +  D E   L++ DW+H S
Sbjct:    7 LVSVSLFVSAVLARTVEYGLKISDGEIAPDGVKRNATLVNGGYPGPLIFANKGDTLKVKVQNKLTNPEMYRTTSIHWHGLLQHRNADDDGPSFVTQCPIVPRESYTYTIPLDDQTGTYWYHSHLSSQYVDGLRGPLVIYDPKDPHRRLYDVDDEKTVLIIGDWYHES 173          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC4_THACU (Laccase-4 OS=Thanatephorus cucumeris GN=LCC4 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.806e-20
Identity = 59/186 (31.72%), Postives = 93/186 (50.00%), Query Frame = 3
Query:   96 ILMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKL----YTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFN-LLLSDWWHRSVHEAEVGLSSGHYVGLVS 632
            +L L +   T   +  R+YK++++ +  +PD  +  ++ +NG  PG  I A  GDT+ + +TN+L          IHWHG+ Q  T   DG A ++QCPI    +Y Y   +  + GT +YH HL  Q   GL G L++ D  D  K  +  D     ++L DW+H      E  + S +   L+S
Sbjct:    7 LLPLLAAVSTPAFAAVRNYKFDIKNVNVAPDGFQRPIVSVNGLVPGTLITANKGDTLRINVTNQLTDPSMRRATTIHWHGLFQATTADEDGPAFVTQCPIAQNLSYTYEIPLHGQTGTMWYHAHLASQYVDGLRGPLVIYDPNDPHKSRYDVDDASTVVMLEDWYHTPAPVLEKQMFSTNNTALLS 192          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC2_THACU (Laccase-2 OS=Thanatephorus cucumeris GN=LCC2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.664e-20
Identity = 55/148 (37.16%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  150 YKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKL----YTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            Y ++V     +PD      + +NG+FPGP I A  GDT+ + + NKL          IHWHG+ Q  T   DG A ++QCPI P E+Y Y   + ++ GTY+YH HL  Q   GL G +++ D  D  +  +  D E  +  L+DW+H
Sbjct:   24 YGFDVANGAVAPDGVTRNAVLVNGRFPGPLITANKGDTLKITVRNKLSDPTMRRSTTIHWHGLLQHRTAEEDGPAFVTQCPIPPQESYTYTMPLGEQTGTYWYHSHLSSQYVDGLRGPIVIYDPHDPYRNYYDVDDERTVFTLADWYH 171          
The following BLAST results are available for this feature:
BLAST of FC876416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
COPA2_PSESM1.139e-2145.00Copper resistance protein A homolog OS=Pseudomonas... [more]
LAC1_TRAVI1.488e-2141.30Laccase-1 OS=Trametes villosa GN=LCC1 PE=3 SV=1[more]
LAC1_AGABI2.538e-2135.76Laccase-1 OS=Agaricus bisporus GN=lcc1 PE=1 SV=1[more]
LAC2_TRAVE4.329e-2141.43Laccase-2 OS=Trametes versicolor GN=LCC2 PE=1 SV=1[more]
LAC3_THACU5.653e-2135.93Laccase-3 OS=Thanatephorus cucumeris GN=LCC3 PE=2 ... [more]
LAC2_TRAVI1.259e-2040.71Laccase-2 OS=Trametes villosa GN=LCC2 PE=3 SV=1[more]
LAC1_TRAHI1.259e-2039.13Laccase OS=Trametes hirsuta PE=1 SV=1[more]
LAC1_THACU1.645e-2035.33Laccase-1 OS=Thanatephorus cucumeris GN=LCC1 PE=1 ... [more]
LAC4_THACU2.806e-2031.72Laccase-4 OS=Thanatephorus cucumeris GN=LCC4 PE=1 ... [more]
LAC2_THACU3.664e-2037.16Laccase-2 OS=Thanatephorus cucumeris GN=LCC2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC32004E07EF DevOvary1 Citrus clementina cDNA clone C32004E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876416 ID=FC876416; Name=FC876416; organism=Citrus clementina; type=EST; length=632bp
GGATCTTTCACCTTCTTTCTTACTCTTCATTAATAGTTGGATAGAAAAAA
ATGGGGTTAGGTTTGAGACATGTTGCTGTTGTTGTCACTTGTTGGATACT
AATGTTGTGTTCAGTTTTTGAGACCTCGTACGGTTCAAAAACCAGACACT
ATAAGTGGGAAGTAGAGTACATGTTTTGGTCCCCGGATTGCAAAGAAAGC
ATAGTGATGGGGATCAACGGTCAGTTTCCGGGGCCGACGATCCGAGCCAG
GGCCGGCGACACGATCGCCGTCGAGCTCACTAACAAGCTCTATACTGAAG
GAGTTGTGATTCATTGGCACGGAATCAGACAGCTCGGCACTCCATGGGCT
GATGGCACTGCTTCCATCTCCCAGTGTCCTATTAACCCCGGAGAAACCTA
TCTTTACAGATTCAAAGTTGACAAGGCAGGAACGTACTTTTACCATGGAC
ACTTAGGGATGCAAAGATCAGCAGGTCTGTACGGATCTCTGATTGTGGAC
GTGGCAGACGGAGAGAAAGAGCCATTCCATTATGATGGGGAGTTCAACTT
GTTGTTAAGTGATTGGTGGCACAGAAGTGTCCATGAAGCAGAGGTCGGCC
TCTCCTCAGGCCATTACGTTGGATTGGTGAGC
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