FC876416

Overview
NameFC876416
Unique NameFC876416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: ASOL_TOBAC (L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.979e-18
Identity = 58/182 (31.87%), Postives = 87/182 (47.80%), Query Frame = 3
Query:   84 VTCWILMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDG-EFNLLLSDWWHRSVHEAEVGLSSGHYVG 623
            VT   L+LC            ++ W V Y   +P       + INGQFPGP I   + + I V + N L  E  +  W+G++     W DGT   + CPI PG+ + YRF+V D+ G+Y Y     + R+AG YG+L V        PF     E+N+ + DW+++     +  L  G  +G
Sbjct:    6 VTFVALLLCLSVGVIAEDPYLYFNWNVTYGTIAPLGVPQQGILINGQFPGPRINCTSNNNIVVNVFNNL-DEPFLFTWNGVQHRKNSWQDGTPG-TMCPIMPGQNFTYRFQVKDQIGSYSYFPTTALHRAAGGYGALNVHSRALIPVPFDNPADEYNVFVGDWYNKGHKTLKKILDGGRTIG 185          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC3_BOTFU (Laccase-3 (Fragment) OS=Botryotinia fuckeliana GN=lcc3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.303e-17
Identity = 44/119 (36.97%), Postives = 65/119 (54.62%), Query Frame = 3
Query:  228 PGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNL-LLSDWWHRSV 581
            PGPT+ A  GD I V L N +   G  IHWHG+RQ  T   DG   I++CP+ PG+T  Y F+  + GT +YH H   Q   G+ G ++++         +YD +  +  +SDW++  V
Sbjct:    1 PGPTLYADWGDMIQVTLKNSMPDNGTGIHWHGLRQYHTCTEDGVPGITECPLAPGDTKTYTFQATQFGTSWYHSHYSSQYGEGMLGGIVIN----GPATSNYDVDLGVYTISDWYYTPV 115          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC1_PLEOS (Laccase-1 OS=Pleurotus ostreatus GN=POX1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.792e-17
Identity = 48/128 (37.50%), Postives = 69/128 (53.91%), Query Frame = 3
Query:  210 GINGQFPGPTIRARAGDTIAVELTNKLYTEGVV----IHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIV-DVADGEKEPFHYDGEFNLL-LSDWWH 572
            G +    G  ++   GD   + + N+L    ++    IHWHG  Q G+ WADG A ++QCPI  G ++LY F V D+AGT++YH HL  Q   GL G  IV D +D     +  D    ++ L DW+H
Sbjct:   58 GTSETLTGVLVQGNKGDNFQLNVLNQLSDTTMLKTTSIHWHGFFQSGSTWADGPAFVNQCPIASGNSFLYDFNVPDQAGTFWYHSHLSTQYCDGLRGPFIVYDPSDPHLSLYDVDNADTIITLEDWYH 185          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: SKS2_ARATH (Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana GN=SKS2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.953e-17
Identity = 52/161 (32.30%), Postives = 84/161 (52.17%), Query Frame = 3
Query:  150 YKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVHEAEVGLSSGHYVGL 626
            Y + + Y+  SP      V+ +NG+FPGP I A     + V + N L  E +++ W G++     W DG    + CPI P   + Y F++ D+ G+YFY   L  QR++G +G+LI++  D    PF   DGE   ++ DW+ ++       L SG  +G+
Sbjct:   30 YDFTLSYITASPLGVPQQVIAVNGKFPGPVINATTNYNVHVNVLNHL-DEPLLLTWPGVQMRRNSWQDGVLG-TNCPIPPNWNFTYDFQLKDQIGSYFYSPSLNFQRASGGFGALIINNRDLVPIPFTEPDGEIIFIIGDWYTQNHTALRRILDSGKELGM 188          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC1_NEUCR (Laccase OS=Neurospora crassa GN=lacc PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.210e-16
Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = 3
Query:  138 KTRHYKWEV-EYMFW-SPD--CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINP-GETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVD 500
            KTR YK  + E   W  PD   K+ ++M +N +  GPTI+A  GD I + + NKL + G  IHWHG+ Q  +   DG   +++CPI P G + +YR++  + GT +YH H   Q   G+ G ++++
Sbjct:   83 KTRRYKLTLTETDNWIGPDGVIKDKVMM-VNDKIIGPTIQADWGDYIEITVINKLKSNGTSIHWHGMHQRNSNIQDGVNGVTECPIPPRGGSKVYRWRATQYGTSWYHSHFSAQYGNGIVGPIVIN 207          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC1_MELAO (Laccase-1 OS=Melanocarpus albomyces GN=LAC1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.151e-16
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query:  204 VMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINP-GETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVD 500
            VM ING   GP I A  GDT+ V + N L T G  IHWHGI Q  T   DG   +++CPI P G    YR++  + GT +YH H   Q   G+ G++ ++
Sbjct:  107 VMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQIN 206          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: FIO1_SCHPO (Iron transport multicopper oxidase fio1 OS=Schizosaccharomyces pombe GN=fio1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.593e-15
Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = 3
Query:   96 ILMLCSVFETSYGSKTRHYKWEVEYMF-WSPDCKESI--VMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVV-IHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWH 572
            +L+ C  F  +   K R ++W V  ++   PD   +   V+G+N ++P   +    GD + +++TN L       +H HG+ Q  TP+ DG    +QC I PG T+ Y +   + GTY+ H H   Q   GL    I++  +   EP+ YD E+ + ++DW++
Sbjct:   12 LLLTCVRFVVA---KERLFEWNVTDVYDVDPDGSGNSRWVIGVNNKWPIDPLVVDYGDQVIIKMTNSLANNRTTSLHSHGLFQKFTPYMDGVPQSTQCEIPPGATFYYNYTALQNGTYWVHSHDMSQYPDGLRTPFIINALE---EPYDYDEEYIISMTDWYY 168          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC1_EMENI (Laccase-1 OS=Emericella nidulans GN=yA PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 8.742e-14
Identity = 44/151 (29.14%), Postives = 70/151 (46.36%), Query Frame = 3
Query:  216 NGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIV---------------DVADGEKEPFHYDGEFNLLLSDWWH-RSVHEAEVGLSSGHYV 620
            NG++PGP +     D + V + N L      +HWHG+    TP ADG   ++Q PI PG T+ YRF+   AGT++YH H       G  G++ +               D  +  +  +  D  + +L +DW +  S     + + SG+ V
Sbjct:   48 NGEYPGPDLIFDEDDDVEVLVINNL-PFNTTVHWHGLEMRETPEADGVPGLTQTPIEPGATFTYRFRAYPAGTFWYHSHYKGLMQDGQVGAMYIRRKPDALRPYAVITEDPRELAEIQYAEDNPYLMLATDWTYLTSAEYHNIEVESGYNV 197          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: YD506_YEAST (Putative multicopper oxidase YDR506C OS=Saccharomyces cerevisiae GN=YDR506C PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 3
Query:  204 VMGINGQFP--GPTIRARAGDTIAVELTNKLYTE--------------GVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKA--GTYFYHGHLGMQRSAGLYGSLIVDVAD 509
            V+ ING     GP IR ++GDT+ ++LTN + +E                 +H+HG+  L   + DG   ++Q  I  GE+Y Y F +D++  GT++YH H  +Q   G+ G LIV+  D
Sbjct:   48 VISINGYSATFGPEIRVKSGDTLNLKLTNWICSEEEASKDSDVWKDYCSTALHFHGVVPLANEF-DGIPGLTQPTIGYGESYWYNFTIDQSTCGTFWYHSHSSVQYGDGMRGVLIVECDD 166          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC16_ORYSJ (Putative laccase-16 OS=Oryza sativa subsp. japonica GN=LAC16 PE=5 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 36/112 (32.14%), Postives = 61/112 (54.46%), Query Frame = 3
Query:  258 DTIAVELTNKLYTEGVVIHWH--GIRQLGTPWADGTASISQCPINPGETYLYR-FKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHY-DGEFNLLLSDWWHRSV 581
            D   + L +KL    +++ WH  G+ Q   PW+DG   I+QCPI P   + Y+    ++ GT ++H H    R A ++G++++    G   PF+  D E  ++LS+WW+  V
Sbjct:    2 DRKGIVLGSKLAVFSMILLWHRHGVDQPRNPWSDGPEFITQCPIRPCGNFTYQVILFEEEGTLWWHAHSDFDR-ATVHGAIVIHPKHGTTFPFNKPDKEIPIILSEWWNDDV 112          
The following BLAST results are available for this feature:
BLAST of FC876416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
ASOL_TOBAC9.979e-1831.87L-ascorbate oxidase homolog OS=Nicotiana tabacum P... [more]
LAC3_BOTFU1.303e-1736.97Laccase-3 (Fragment) OS=Botryotinia fuckeliana GN=... [more]
LAC1_PLEOS3.792e-1737.50Laccase-1 OS=Pleurotus ostreatus GN=POX1 PE=2 SV=1[more]
SKS2_ARATH4.953e-1732.30Monocopper oxidase-like protein SKS2 OS=Arabidopsi... [more]
LAC1_NEUCR3.210e-1637.30Laccase OS=Neurospora crassa GN=lacc PE=1 SV=3[more]
LAC1_MELAO7.151e-1642.00Laccase-1 OS=Melanocarpus albomyces GN=LAC1 PE=1 S... [more]
FIO1_SCHPO1.593e-1530.06Iron transport multicopper oxidase fio1 OS=Schizos... [more]
LAC1_EMENI8.742e-1429.14Laccase-1 OS=Emericella nidulans GN=yA PE=2 SV=3[more]
YD506_YEAST6.927e-1134.17Putative multicopper oxidase YDR506C OS=Saccharomy... [more]
LAC16_ORYSJ6.927e-1132.14Putative laccase-16 OS=Oryza sativa subsp. japonic... [more]

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Properties
Property NameValue
Genbank descriptionC32004E07EF DevOvary1 Citrus clementina cDNA clone C32004E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876416 ID=FC876416; Name=FC876416; organism=Citrus clementina; type=EST; length=632bp
GGATCTTTCACCTTCTTTCTTACTCTTCATTAATAGTTGGATAGAAAAAA
ATGGGGTTAGGTTTGAGACATGTTGCTGTTGTTGTCACTTGTTGGATACT
AATGTTGTGTTCAGTTTTTGAGACCTCGTACGGTTCAAAAACCAGACACT
ATAAGTGGGAAGTAGAGTACATGTTTTGGTCCCCGGATTGCAAAGAAAGC
ATAGTGATGGGGATCAACGGTCAGTTTCCGGGGCCGACGATCCGAGCCAG
GGCCGGCGACACGATCGCCGTCGAGCTCACTAACAAGCTCTATACTGAAG
GAGTTGTGATTCATTGGCACGGAATCAGACAGCTCGGCACTCCATGGGCT
GATGGCACTGCTTCCATCTCCCAGTGTCCTATTAACCCCGGAGAAACCTA
TCTTTACAGATTCAAAGTTGACAAGGCAGGAACGTACTTTTACCATGGAC
ACTTAGGGATGCAAAGATCAGCAGGTCTGTACGGATCTCTGATTGTGGAC
GTGGCAGACGGAGAGAAAGAGCCATTCCATTATGATGGGGAGTTCAACTT
GTTGTTAAGTGATTGGTGGCACAGAAGTGTCCATGAAGCAGAGGTCGGCC
TCTCCTCAGGCCATTACGTTGGATTGGTGAGC
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