FC876421

Overview
NameFC876421
Unique NameFC876421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10313 contig Ccv1_Contig10313:4..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: YHEB_SCHPO (Uncharacterized protein PB2B2.11 OS=Schizosaccharomyces pombe GN=SPBPB2B2.11 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28
Identity = 79/197 (40.10%), Postives = 114/197 (57.87%), Query Frame = 3
Query:  159 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKA--SSNFKFVKGDIAS--ADLVNFLLITESIDTIMH---FAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV----TGQIR---RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV-IHPWKTCYGP 704
            LITG AGFI S+  +  +  YP++    +DKL Y SN   +  SK     NF+F++ D+A+    L  F++    I+ I H   FAA++ VD SF +   FTKNNI  T  LLE  ++      ++R    F+HVSTDEVYGE DE+A V   E S+L PT+PY+A+KA  ++++ +Y  SY + V +      YGP
Sbjct:   13 LITGGAGFIGSNFLDYAVDKYPDFHFTCIDKLSYVSNYTTVFLSKVLNQPNFRFLEMDLATNYKFLYQFMVEDSEINKITHIINFAAESSVDRSFIDPLYFTKNNILSTQNLLECVRILLGKKEELRNRLNFVHVSTDEVYGEQDENASV--DEKSKLNPTSPYAASKAAVDLIIQSYRYSYKISVTVIRANNVYGP 207          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBB_ECOLX (dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 76/199 (38.19%), Postives = 106/199 (53.27%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLL-------PTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            IL+TG AGFI S V   +I N  +  +V +DKL Y  NL++L     S  + F   DI  A+          +D +MH AA++HVD S      F + NI GT+VLLEA +           +  RF H+STDEVYG+      V ++E  QL        P++PYSA+KA ++ LV A+ R+YGLP ++      YGP
Sbjct:    3 ILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLAEISDSERYSFENADICDAEGDGLYFGQHQLDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSGLDDEKKKNFRFHHISTDEVYGDLPHPDEVNSNETLQLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVSNCSNNYGP 200          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBB_SHIFL (dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27
Identity = 76/199 (38.19%), Postives = 106/199 (53.27%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLL-------PTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            IL+TG AGFI S V   +I N  +  +V +DKL Y  NL++L     S  + F   DI  A  ++ +      D +MH AA++HVD S      F + NI GT+VLLEA +           +  RF H+STDEVYG+        N+EA  L        P++PYSA+KA ++ LV A+ R+YGLP ++      YGP
Sbjct:    3 ILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLADVSDSERYAFEHADICDAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALNDEKKKSFRFHHISTDEVYGDLPHPDEANNNEALPLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGP 200          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBB_NEIGO (dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.805e-27
Identity = 79/203 (38.92%), Postives = 112/203 (55.17%), Query Frame = 3
Query:  132 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ--------IRRFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            M T   KNIL+TG AGFI S V   +I+N  +  +V LDKL Y  NL++L     +  + F + DI     ++ +      D +MH AA++HVD + G++ EF + NI GT  LLEA +   Q          RF H+STDEVYG+   TD+       E +   P++PYSA+KA A+ LV A+ R+Y LP ++      YGP
Sbjct:    1 MQTEGKKNILVTGGAGFIGSAVVRHIIQNTRD-SVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQMPSEKREAFRFHHISTDEVYGDLHGTDDLFT----ETTPYAPSSPYSASKAAADHLVRAWQRTYRLPSIVSNCSNNYGP 198          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMA (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A GN=rfbB1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.491e-27
Identity = 77/197 (39.09%), Postives = 110/197 (55.84%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ--------IRRFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            + IL+TG AGFI S V   +IRN  +  +V LDKL Y  NL++L     +  + F + DI     ++ +      D +MH AA++HVD S G++ EF + NI GT  LLEA +   Q          RF H+STDEVYG+   TD+       E +   P++PYSA+KA ++ LV A+ R+YGLP ++      YGP
Sbjct:    2 RKILVTGGAGFIGSAVVRHIIRNTQD-SVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMPSEKHEAFRFHHISTDEVYGDLSGTDDLFT----ETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGP 193          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RMLB_STRMU (dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans GN=rmlB PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.467e-26
Identity = 75/195 (38.46%), Postives = 111/195 (56.92%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETD-EDAVVGNHEA--------SQLLPTNPYSATKAGAEMLVMAYGRSYGL-PVIHPWKTCYGP 704
            KNI++TG AGFI S+  + +  N+P+  + VLDKL Y  N  NL         + V GDIA ++LV+ L      D I+H+AA++H DNS  +   F   N  GT++LLEA +      RF HVSTDEVYG+    + + G+ E         ++  P++PYS+TKA ++++V A+ RS+G+   I      YGP
Sbjct:    5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNRANL-EEILGDRVELVVGDIADSELVDKL--AAKADAIVHYAAESHNDNSLKDPSPFIYTNFVGTYILLEAARKYD--IRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETKYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGP 194          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMB (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B GN=rfbB1 PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 76/197 (38.58%), Postives = 110/197 (55.84%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ--------IRRFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            + IL+TG AGFI S V   +IRN  +  +V +DKL Y  NL++L     +  + F + DI     ++ +      D +MH AA++HVD S G++ EF + NI GT  LLEA +   Q          RF H+STDEVYG+   TD+       E +   P++PYSA+KA ++ LV A+ R+YGLP ++      YGP
Sbjct:    2 RKILVTGGAGFIGSAVVRHIIRNTRD-AVVNVDKLTYAGNLESLTEVADNPRYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMPSEQHEAFRFHHISTDEVYGDLGGTDDLFT----ETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGP 193          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFFG_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rffG PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 79/197 (40.10%), Postives = 104/197 (52.79%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV--------TGQIRRFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            + ILITG AGFI S +  R I N     +VV+DKL Y  NL +L P   S  F F K DI     +  +      D +MH AA++HVD S      F + NI GT+ LLEA +              RF H+STDEVYG+   TD+       E +   P++PYSA+KA ++ LV A+ R+YGLP +I      YGP
Sbjct:    2 RKILITGGAGFIGSALV-RYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFT----ETTPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGP 193          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBB_SALTY (dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium GN=rfbB PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 74/199 (37.19%), Postives = 106/199 (53.27%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK----VTGQIR----RFIHVSTDEVYGETDEDAVVGNH-------EASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            ILITG AGFI S V   +I+N  +  +V +DKL Y  NL++L     S+ + F   DI  +  +  +      D +MH AA++HVD S      F + NI GT+ LLE  +      G+ +    RF H+STDEVYG+      V N        E +   P++PYSA+KA ++ LV A+ R+YGLP ++      YGP
Sbjct:    3 ILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGP 200          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBB_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rfbB PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 75/199 (37.69%), Postives = 102/199 (51.26%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR--------RFIHVSTDEVYGETDEDAVVGNHEASQLL-------PTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            IL+TG AGFI S V   +I N  +  +V +DKL Y  N ++L     S  + F   DI  A  +  +      D +MH AA++HVD S      F + NI GT+VLLEA +              RF H+STDEVYG+      V N E   L        P++PYSA+KA ++ LV A+ R+YGLP ++      YGP
Sbjct:    3 ILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNRESLADVSDSERYVFEHADICDAPAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDSDKKNSFRFHHISTDEVYGDLPHPDEVNNTEELPLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGP 200          
The following BLAST results are available for this feature:
BLAST of FC876421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
YHEB_SCHPO7.667e-2840.10Uncharacterized protein PB2B2.11 OS=Schizosaccharo... [more]
RFBB_ECOLX1.001e-2738.19dTDP-glucose 4,6-dehydratase OS=Escherichia coli G... [more]
RFBB_SHIFL1.708e-2738.19dTDP-glucose 4,6-dehydratase OS=Shigella flexneri ... [more]
RFBB_NEIGO3.805e-2738.92dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrho... [more]
RFBB_NEIMA6.491e-2739.09dTDP-glucose 4,6-dehydratase OS=Neisseria meningit... [more]
RMLB_STRMU2.467e-2638.46dTDP-glucose 4,6-dehydratase OS=Streptococcus muta... [more]
RFBB_NEIMB4.207e-2638.58dTDP-glucose 4,6-dehydratase OS=Neisseria meningit... [more]
RFFG_ECOLI5.495e-2640.10dTDP-glucose 4,6-dehydratase OS=Escherichia coli (... [more]
RFBB_SALTY5.495e-2637.19dTDP-glucose 4,6-dehydratase OS=Salmonella typhimu... [more]
RFBB_ECOLI5.495e-2637.69dTDP-glucose 4,6-dehydratase OS=Escherichia coli (... [more]

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Properties
Property NameValue
Genbank descriptionC32004E12EF DevOvary1 Citrus clementina cDNA clone C32004E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876421 ID=FC876421; Name=FC876421; organism=Citrus clementina; type=EST; length=706bp
GACTCTTCAAAAGATCACTGCGGTTTCTTCTCAGTTTCCATTTTCAACAC
AGTTTCTCTCTCTAGATTCGCGTTTTGGCATTTGGGTTTGACTCGTCTTC
GTTGATCTGATCGTCTTTAAGTTGATTTGCAATGGCTACGTATACCCCGA
AGAACATCCTCATCACTGGGGCTGCTGGGTTCATTGCTTCCCATGTATGC
AACCGGCTGATTCGTAACTATCCCGAGTACAAAATTGTTGTGCTTGACAA
GCTTGATTATTGTTCGAATCTGAAAAACCTAATACCCTCCAAAGCATCCT
CCAACTTTAAGTTTGTTAAGGGGGACATTGCCAGTGCTGACCTTGTCAAC
TTTCTTCTCATCACTGAGTCCATTGACACTATTATGCACTTTGCTGCGCA
AACTCATGTGGACAACTCTTTTGGAAATAGTTTTGAGTTTACCAAGAACA
ATATCTATGGTACTCATGTCCTCCTTGAAGCCTGCAAAGTGACTGGGCAG
ATCCGGAGGTTCATCCATGTCAGCACAGATGAGGTCTATGGGGAGACTGA
CGAGGATGCTGTTGTGGGTAACCATGAAGCTTCCCAACTCCTGCCAACAA
ATCCTTATTCTGCAACTAAAGCTGGAGCAGAAATGCTTGTTATGGCTTAT
GGTAGGTCATATGGGCTACCAGTGATACACCCGTGGAAAACATGTTATGG
ACCAAT
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