FC876421

Overview
NameFC876421
Unique NameFC876421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10313 contig Ccv1_Contig10313:4..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFFG_HAEIN (dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae GN=rffG PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 71/185 (38.38%), Postives = 102/185 (55.14%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGE--TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            NIL+TG +GFI S +  R I N+ +  ++ +DKL Y +N   L   + +  + F K DI   +++  +      D +MH AA++HVD S   + +F + NI GT+ LLE  K              RF H+STDEVYG+    E A     E S   P++PYSA+KA +  LV A+ R+YGLPVI
Sbjct:    3 NILVTGGSGFIGSALI-RYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDICDLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDEAKKTTFRFHHISTDEVYGDLSLSEPAFT---EQSPYHPSSPYSASKAASNHLVQAWHRTYGLPVI 183          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBB_XANCB (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rfbB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24
Identity = 69/181 (38.12%), Postives = 95/181 (52.49%), Query Frame = 3
Query:  159 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            L+TG AGFI  +     +      ++V LD L Y  NL  L   + +++  FVKGDI    LV  LL     D +++FAA++HVD S      F + N+ GT  LLEA +              RF+HVSTDEVYG   E       E +   P +PYSA+KA ++ LV A+  +YGLPV+
Sbjct:    5 LVTGGAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVL 181          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBB_XANCP (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris GN=rfbB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 69/181 (38.12%), Postives = 95/181 (52.49%), Query Frame = 3
Query:  159 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            L+TG AGFI  +     +      ++V LD L Y  NL  L   + +++  FVKGDI    LV  LL     D +++FAA++HVD S      F + N+ GT  LLEA +              RF+HVSTDEVYG   E       E +   P +PYSA+KA ++ LV A+  +YGLPV+
Sbjct:    5 LVTGRAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVL 181          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBB_RHISN (Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03580 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24
Identity = 70/192 (36.46%), Postives = 103/192 (53.65%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV----TGQIR----RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            IL+TG AGFI S +   L+    E  ++ +DKL Y  NL +L P +   N++F++ DI     +N    T   D ++H AA++HVD S   + +F + N+ GT  +LE  +       Q R    + +HVSTDEVYG   +       E S   P++PYSA+KA ++    A+ R+YGLP VI      YGP
Sbjct:    3 ILVTGGAGFIGSALVRYLVSINAE--VLNVDKLTYAGNLASLKPVEGLRNYRFLRADICDRVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQNRKAFFKMLHVSTDEVYGSLGDRGQF--EEVSPYDPSSPYSASKAASDHFATAWQRTYGLPVVISNCSNNYGP 190          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 74/191 (38.74%), Postives = 101/191 (52.88%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD------YCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFE-FTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            IL+TGAAGFI SH+C  L+++     I + D +          NLKNL+P K    F F+K ++ +ADL + L   E +D I H AA   V +S+GN F  +  +NI     LLEAC+    I+ F+  ST  VYGE          E + L P +PY  TK   E L   Y +S+G+P VI  + T YGP
Sbjct:    3 ILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEK---RFTFIKENLLTADLASLL---EGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACR-EHSIQTFVFASTSSVYGEKQGKV----SENTSLSPLSPYGVTKLTGEKLCHVYKQSFGIPIVILRFFTVYGP 182          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: STRE_STRGR (dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 66/187 (35.29%), Postives = 99/187 (52.94%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIR--NYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV-IHPWKTCYGP 704
            ++L+TGAAGFI S     L+     P+  +  LD L Y  N  NL   +    ++F +GDI  A       +    D ++H AA++HVD S  ++  F + N++GT  LL+A    G +  F+ VSTDEVYG  +  +     E   L P +PYSA+KA  ++L +A+  S+GL V +      YGP
Sbjct:    4 HLLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDICDAPGRR---VMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHG-VASFVQVSTDEVYGSLEHGSWT---EDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSNNYGP 183          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: YGAE_ERWAM (Uncharacterized protein in galE 3'region (Fragment) OS=Erwinia amylovora PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 59/166 (35.54%), Postives = 87/166 (52.41%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV--------TGQIRRFIHVSTDEVYGET--DEDAVVGNHEASQLLPTNPYSATKA 623
            IL+TG AGFI S V   +I N  +  ++ +DKL Y  NL++L     +    F K DI  ++ +         D +MH AA++HVD S      F + N+ GT+VLLEA ++          +  R  H+STDEV+G+    ED      E +   P++PYSA+KA
Sbjct:    3 ILVTGGAGFIGSAVIRHIINNTDD-TVLNIDKLTYAGNLESLQEISDNPRDHFSKTDICDSESLKRAFNDFEPDVVMHLAAESHVDRSIDGPAAFIETNMIGTYVLLEAARMYWLGLPVERKEAFRLHHISTDEVFGDLHGTEDLFT---EQTAYAPSSPYSASKA 164          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_BACHD (UDP-glucose 4-epimerase OS=Bacillus halodurans GN=galE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.733e-17
Identity = 57/174 (32.76%), Postives = 87/174 (50.00%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            IL+TG AG+I SH    L+    +  ++VLD L           + A S+  F  GDI    L++ +  T SIDT++HFAA + V  S     E+ +NN+ GTH LL+   +   +++ +  ST   YGE  +  +    E+   +PTNPY  TK   E +      +YGL  +
Sbjct:    3 ILVTGGAGYIGSHTVLFLLEQGEQ--VIVLDNLQKGH-------AGALSDVTFYHGDIRDDQLLDTIFTTHSIDTVIHFAANSLVGESVKQPIEYYENNVIGTHTLLKK-MLEHDVKKIVFSSTAATYGEPVQIPI---QESDPTIPTNPYGETKLAIEKMFHWCQEAYGLQYV 163          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: ARAE3_ARATH (Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 51/180 (28.33%), Postives = 92/180 (51.11%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDY-----CSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            ++L+TG AG+I SH   RL+++   Y++ ++D L          L+ L P       +F+  D+  A  V+ +    + D +MHFAA  +V  S  +  ++  N    T V+LEA     ++++ I+ ST   YGE D+  +V   E +  +P NPY   K  AE +++ + ++  + V+
Sbjct:   71 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNLGAVKVLQGLFPEPG--RLQFIYADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAV-ARHKVKKLIYSSTCATYGEPDKMPIV---EVTPQVPINPYGKAKKMAEDMILDFSKNSDMAVM 242          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_STRLI (UDP-glucose 4-epimerase OS=Streptomyces lividans GN=galE PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 56/174 (32.18%), Postives = 89/174 (51.15%), Query Frame = 3
Query:  159 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITE-SIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            L+TG AG++ S V   L+    E  +VVL  L   +  +  +P+ AS    F +GDI   D +  +     S D ++HFAA + V  S     ++  NN+ GT  LLEA +  G +RR +  ST   YGE ++  +V   E++   PTNPY A+K   + ++     ++GL  +
Sbjct:    6 LVTGGAGYVGSVVAQHLVEAGNE--VVVLHNLS--TGFRAGVPAGAS----FYRGDIRDQDFMRKVFRGRLSFDGVLHFAAFSQVGESVVKPEKYWDNNVGGTMALLEAMRGAG-VRRLVFSSTAATYGEPEQVPIV---ESAPTRPTNPYGASKLAVDHMITGEAAAHGLGAV 167          
The following BLAST results are available for this feature:
BLAST of FC876421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RFFG_HAEIN4.652e-2538.38dTDP-glucose 4,6-dehydratase OS=Haemophilus influe... [more]
RFBB_XANCB3.015e-2438.12dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]
RFBB_XANCP3.938e-2438.12dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]
RFBB_RHISN6.717e-2436.46Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium... [more]
YTCB_BACSU4.354e-2338.74Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]
STRE_STRGR1.654e-2235.29dTDP-glucose 4,6-dehydratase OS=Streptomyces grise... [more]
YGAE_ERWAM7.193e-1835.54Uncharacterized protein in galE 3'region (Fragment... [more]
GALE_BACHD2.733e-1732.76UDP-glucose 4-epimerase OS=Bacillus halodurans GN=... [more]
ARAE3_ARATH9.722e-1528.33Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsi... [more]
GALE_STRLI1.658e-1432.18UDP-glucose 4-epimerase OS=Streptomyces lividans G... [more]

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Properties
Property NameValue
Genbank descriptionC32004E12EF DevOvary1 Citrus clementina cDNA clone C32004E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876421 ID=FC876421; Name=FC876421; organism=Citrus clementina; type=EST; length=706bp
GACTCTTCAAAAGATCACTGCGGTTTCTTCTCAGTTTCCATTTTCAACAC
AGTTTCTCTCTCTAGATTCGCGTTTTGGCATTTGGGTTTGACTCGTCTTC
GTTGATCTGATCGTCTTTAAGTTGATTTGCAATGGCTACGTATACCCCGA
AGAACATCCTCATCACTGGGGCTGCTGGGTTCATTGCTTCCCATGTATGC
AACCGGCTGATTCGTAACTATCCCGAGTACAAAATTGTTGTGCTTGACAA
GCTTGATTATTGTTCGAATCTGAAAAACCTAATACCCTCCAAAGCATCCT
CCAACTTTAAGTTTGTTAAGGGGGACATTGCCAGTGCTGACCTTGTCAAC
TTTCTTCTCATCACTGAGTCCATTGACACTATTATGCACTTTGCTGCGCA
AACTCATGTGGACAACTCTTTTGGAAATAGTTTTGAGTTTACCAAGAACA
ATATCTATGGTACTCATGTCCTCCTTGAAGCCTGCAAAGTGACTGGGCAG
ATCCGGAGGTTCATCCATGTCAGCACAGATGAGGTCTATGGGGAGACTGA
CGAGGATGCTGTTGTGGGTAACCATGAAGCTTCCCAACTCCTGCCAACAA
ATCCTTATTCTGCAACTAAAGCTGGAGCAGAAATGCTTGTTATGGCTTAT
GGTAGGTCATATGGGCTACCAGTGATACACCCGTGGAAAACATGTTATGG
ACCAAT
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