FC876421
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFFG_HAEIN (dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae GN=rffG PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25 Identity = 71/185 (38.38%), Postives = 102/185 (55.14%), Query Frame = 3 Query: 153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGE--TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677 NIL+TG +GFI S + R I N+ + ++ +DKL Y +N L + + + F K DI +++ + D +MH AA++HVD S + +F + NI GT+ LLE K RF H+STDEVYG+ E A E S P++PYSA+KA + LV A+ R+YGLPVI Sbjct: 3 NILVTGGSGFIGSALI-RYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDICDLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDEAKKTTFRFHHISTDEVYGDLSLSEPAFT---EQSPYHPSSPYSASKAASNHLVQAWHRTYGLPVI 183
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBB_XANCB (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rfbB PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24 Identity = 69/181 (38.12%), Postives = 95/181 (52.49%), Query Frame = 3 Query: 159 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677 L+TG AGFI + + ++V LD L Y NL L + +++ FVKGDI LV LL D +++FAA++HVD S F + N+ GT LLEA + RF+HVSTDEVYG E E + P +PYSA+KA ++ LV A+ +YGLPV+ Sbjct: 5 LVTGGAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVL 181
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBB_XANCP (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris GN=rfbB PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24 Identity = 69/181 (38.12%), Postives = 95/181 (52.49%), Query Frame = 3 Query: 159 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677 L+TG AGFI + + ++V LD L Y NL L + +++ FVKGDI LV LL D +++FAA++HVD S F + N+ GT LLEA + RF+HVSTDEVYG E E + P +PYSA+KA ++ LV A+ +YGLPV+ Sbjct: 5 LVTGRAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVL 181
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RFBB_RHISN (Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03580 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24 Identity = 70/192 (36.46%), Postives = 103/192 (53.65%), Query Frame = 3 Query: 156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV----TGQIR----RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704 IL+TG AGFI S + L+ E ++ +DKL Y NL +L P + N++F++ DI +N T D ++H AA++HVD S + +F + N+ GT +LE + Q R + +HVSTDEVYG + E S P++PYSA+KA ++ A+ R+YGLP VI YGP Sbjct: 3 ILVTGGAGFIGSALVRYLVSINAE--VLNVDKLTYAGNLASLKPVEGLRNYRFLRADICDRVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQNRKAFFKMLHVSTDEVYGSLGDRGQF--EEVSPYDPSSPYSASKAASDHFATAWQRTYGLPVVISNCSNNYGP 190
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23 Identity = 74/191 (38.74%), Postives = 101/191 (52.88%), Query Frame = 3 Query: 156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD------YCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFE-FTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704 IL+TGAAGFI SH+C L+++ I + D + NLKNL+P K F F+K ++ +ADL + L E +D I H AA V +S+GN F + +NI LLEAC+ I+ F+ ST VYGE E + L P +PY TK E L Y +S+G+P VI + T YGP Sbjct: 3 ILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEK---RFTFIKENLLTADLASLL---EGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACR-EHSIQTFVFASTSSVYGEKQGKV----SENTSLSPLSPYGVTKLTGEKLCHVYKQSFGIPIVILRFFTVYGP 182
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: STRE_STRGR (dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22 Identity = 66/187 (35.29%), Postives = 99/187 (52.94%), Query Frame = 3 Query: 153 NILITGAAGFIASHVCNRLIR--NYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV-IHPWKTCYGP 704 ++L+TGAAGFI S L+ P+ + LD L Y N NL + ++F +GDI A + D ++H AA++HVD S ++ F + N++GT LL+A G + F+ VSTDEVYG + + E L P +PYSA+KA ++L +A+ S+GL V + YGP Sbjct: 4 HLLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDICDAPGRR---VMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHG-VASFVQVSTDEVYGSLEHGSWT---EDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSNNYGP 183
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: YGAE_ERWAM (Uncharacterized protein in galE 3'region (Fragment) OS=Erwinia amylovora PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18 Identity = 59/166 (35.54%), Postives = 87/166 (52.41%), Query Frame = 3 Query: 156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV--------TGQIRRFIHVSTDEVYGET--DEDAVVGNHEASQLLPTNPYSATKA 623 IL+TG AGFI S V +I N + ++ +DKL Y NL++L + F K DI ++ + D +MH AA++HVD S F + N+ GT+VLLEA ++ + R H+STDEV+G+ ED E + P++PYSA+KA Sbjct: 3 ILVTGGAGFIGSAVIRHIINNTDD-TVLNIDKLTYAGNLESLQEISDNPRDHFSKTDICDSESLKRAFNDFEPDVVMHLAAESHVDRSIDGPAAFIETNMIGTYVLLEAARMYWLGLPVERKEAFRLHHISTDEVFGDLHGTEDLFT---EQTAYAPSSPYSASKA 164
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_BACHD (UDP-glucose 4-epimerase OS=Bacillus halodurans GN=galE PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.733e-17 Identity = 57/174 (32.76%), Postives = 87/174 (50.00%), Query Frame = 3 Query: 156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677 IL+TG AG+I SH L+ + ++VLD L + A S+ F GDI L++ + T SIDT++HFAA + V S E+ +NN+ GTH LL+ + +++ + ST YGE + + E+ +PTNPY TK E + +YGL + Sbjct: 3 ILVTGGAGYIGSHTVLFLLEQGEQ--VIVLDNLQKGH-------AGALSDVTFYHGDIRDDQLLDTIFTTHSIDTVIHFAANSLVGESVKQPIEYYENNVIGTHTLLKK-MLEHDVKKIVFSSTAATYGEPVQIPI---QESDPTIPTNPYGETKLAIEKMFHWCQEAYGLQYV 163
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: ARAE3_ARATH (Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15 Identity = 51/180 (28.33%), Postives = 92/180 (51.11%), Query Frame = 3 Query: 153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDY-----CSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677 ++L+TG AG+I SH RL+++ Y++ ++D L L+ L P +F+ D+ A V+ + + D +MHFAA +V S + ++ N T V+LEA ++++ I+ ST YGE D+ +V E + +P NPY K AE +++ + ++ + V+ Sbjct: 71 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNLGAVKVLQGLFPEPG--RLQFIYADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAV-ARHKVKKLIYSSTCATYGEPDKMPIV---EVTPQVPINPYGKAKKMAEDMILDFSKNSDMAVM 242
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_STRLI (UDP-glucose 4-epimerase OS=Streptomyces lividans GN=galE PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14 Identity = 56/174 (32.18%), Postives = 89/174 (51.15%), Query Frame = 3 Query: 159 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITE-SIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677 L+TG AG++ S V L+ E +VVL L + + +P+ AS F +GDI D + + S D ++HFAA + V S ++ NN+ GT LLEA + G +RR + ST YGE ++ +V E++ PTNPY A+K + ++ ++GL + Sbjct: 6 LVTGGAGYVGSVVAQHLVEAGNE--VVVLHNLS--TGFRAGVPAGAS----FYRGDIRDQDFMRKVFRGRLSFDGVLHFAAFSQVGESVVKPEKYWDNNVGGTMALLEAMRGAG-VRRLVFSSTAATYGEPEQVPIV---ESAPTRPTNPYGASKLAVDHMITGEAAAHGLGAV 167 The following BLAST results are available for this feature:
BLAST of FC876421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876421 ID=FC876421; Name=FC876421; organism=Citrus clementina; type=EST; length=706bpback to top |