FC876421

Overview
NameFC876421
Unique NameFC876421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_ECOLI (UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 50/165 (30.30%), Postives = 88/165 (53.33%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFK---FVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 641
            +L+TG +G+I SH C +L++N   + +++LD L  C++ ++++P       K   FV+GDI +  L+  +L   +IDT++HFA    V  S     E+  NN+ GT  L+ A +    ++ FI  S+  VYG+  +   V +       P +PY  +K   E ++
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKNFIFSSSATVYGDQPKIPYVESFPTG--TPQSPYGKSKLMVEQIL 160          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_SALTY (UDP-glucose 4-epimerase OS=Salmonella typhimurium GN=galE PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 50/165 (30.30%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFK---FVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 641
            +L+TG +G+I SH C +L++N   + +V+LD L  C++ ++++P       K   FV+GDI +  L+  +L   +IDT++HFA    V  S     E+  NN+ GT  L+ A +    ++  I  S+  VYG+  +   V +       P +PY  +K   E ++
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQN--GHDVVILDNL--CNSKRSVLPVIERLGGKHPTFVEGDIRNEALITEILHDHAIDTVIHFAGLKAVGESVARPLEYYDNNVNGTLRLVSAMR-AANVKNLIFSSSATVYGDQPKIPYVESFPTG--TPQSPYGKSKLMVEQIL 160          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_SALTI (UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 50/165 (30.30%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFK---FVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 641
            +L+TG +G+I SH C +L++N   + +V+LD L  C++ ++++P       K   FV+GDI +  L+  +L   +IDT++HFA    V  S     E+  NN+ GT  L+ A +    ++  I  S+  VYG+  +   V +       P +PY  +K   E ++
Sbjct:    3 VLVTGGSGYIGSHTCVQLLQN--GHDVVILDNL--CNSKRSVLPVIERLGGKHPTFVEGDIRNEALITEILHDHAIDTVIHFAGLKAVGESVAKPLEYYDNNVNGTLRLVSAMR-AANVKNLIFSSSATVYGDQPKIPYVESFPTG--TPQSPYGKSKLMVEQIL 160          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_CORDI (UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae GN=galE PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 52/170 (30.59%), Postives = 93/170 (54.71%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYG 665
            +L+TG AG++ S VC+ ++     +++ ++D L   +  ++ +P  A+    FV+GDI   D+ + +L ++S D ++HFAA++ V  S     E+ ++N+  T  LL+A K    +R  +  ST   YGE +   +    E +   PTNPY ATK   +  + +Y  +YG
Sbjct:    3 LLVTGGAGYVGS-VCSTVLLEQG-HEVTIVDNLT--TGNRDAVPLGAT----FVEGDIK--DVADNVLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMK-RNNVRNIVFSSTAATYGEPETVPIT---EDAPTHPTNPYGATKLSIDYAITSYAHAYG 158          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: YFNG_BACSU (Putative sugar dehydratase/epimerase yfnG OS=Bacillus subtilis GN=yfnG PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 52/181 (28.73%), Postives = 84/181 (46.41%), Query Frame = 3
Query:  132 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 674
            M+ +  KN+ +TG  G + S++   LI        +V D +       NL   +       V+G +    ++   L    IDT+ H AAQ  V  +  N     + NI GT  +LEAC+    I+R I  S+D+ YG+ +    +   E   L   +PY  +K+ A+++   Y  +YGLPV
Sbjct:    1 MSFWKNKNVFVTGCTGLLGSYLVKELIEQGANVTGLVRDHVPQ----SNLYQGEHIKKMNIVRGSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHPLIKRVIVASSDKAYGDQEN---LPYDENMPLQGKHPYDVSKSCADLISHTYFHTYGLPV 174          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 60/174 (34.48%), Postives = 86/174 (49.43%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADL---VNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 668
            IL+TG AGFI SH+ ++LI N   Y +++LD L   +  KN I  KA    +FV  DI   DL   +NF    + ++ ++H AAQ +V NS  N       N+ GT  +LE  +     +     S   VYGE +   V  NH  +   P +PY  +K   E  +  Y R YG+
Sbjct:    2 ILVTGGAGFIGSHIVDKLIEN--NYDVIILDNL--TTGNKNNINPKA----EFVNADIRDKDLDEKINF----KDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSGGAVYGEPNYLPVDENHPIN---PLSPYGLSKYVGEEYIKLYNRLYGI 160          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 55/181 (30.39%), Postives = 90/181 (49.72%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSN-----LKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            KNIL+TG+AGFI  H+   L+ NY + K++ +D L+   N      +N I  K   N+ F+K D +  D +   L  + ID I+H  AQ  V  S  N + + K+N  GT  + E  +    I + ++ S+  VYG   +     +    +  P + Y++TK   E++   Y   YG+ +I
Sbjct:    4 KNILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEI-LKNYENYTFIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFAR-RFDIEKVVYASSSSVYGGNRKIPFSEDDRVDK--PISLYASTKRSNELMAHVYHHLYGIKMI 180          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: ARAE1_ARATH (UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 51/180 (28.33%), Postives = 88/180 (48.89%), Query Frame = 3
Query:  153 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSN-----LKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            ++L+TG AG+I SH   RL++    Y++ ++D L   +      L+ L P       +F+  D+  A  VN +    + D +MHFAA  +V  S     ++  N    T V+LE     G ++  I+ ST   YGE D   ++   E +  +P NPY   K  AE +++ + ++  + V+
Sbjct:   72 HVLVTGGAGYIGSHAALRLLKE--SYRVTIVDNLSRGNLAAVRILQELFPEPG--RLQFIYADLGDAKAVNKIFTENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHG-VKTLIYSSTCATYGEPD---IMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDMAVM 243          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_YERPE (UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 51/165 (30.91%), Postives = 82/165 (49.70%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNL---IPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 641
            +L+TG +G+I SH C +LI     YK V+LD L  C++  ++   I S      +   GDI    L++ +     I  ++HFA    V  S     E+  NN++GT VLLEA +   Q++  I  S+  VYG+  +   V +       P++PY  +K   E ++
Sbjct:    3 VLVTGGSGYIGSHTCVQLIE--AGYKPVILDNL--CNSKSSVLARIHSLTGYTPELYAGDIRDRTLLDSIFAAHPIHAVIHFAGLKAVGESVNRPLEYYNNNVFGTLVLLEAMR-AAQVKNLIFSSSATVYGDQPQIPYVESFPTGS--PSSPYGRSKLMVEQIL 160          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 50/163 (30.67%), Postives = 79/163 (48.47%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCS-NLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV 641
            IL+TG AG+I SH C  L+ +   Y+IVVLD L   S    N +      +  F + D+   + V+ +     I+ ++HFA    V  S     ++  NN+ GT +L EA +  G +++ +  S+  VYG  +   +    E   L  TNPY  TK   E ++
Sbjct:    3 ILVTGGAGYIGSHTCVELLNS--GYEIVVLDNLSNSSAEALNRVKEITGKDLTFYEADLLDREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYG-VKKIVFSSSATVYGVPETSPIT---EDFPLGATNPYGQTKLMLEQIL 159          
The following BLAST results are available for this feature:
BLAST of FC876421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
GALE_ECOLI2.166e-1430.30UDP-glucose 4-epimerase OS=Escherichia coli (strai... [more]
GALE_SALTY3.694e-1430.30UDP-glucose 4-epimerase OS=Salmonella typhimurium ... [more]
GALE_SALTI3.694e-1430.30UDP-glucose 4-epimerase OS=Salmonella typhi GN=gal... [more]
GALE_CORDI3.694e-1430.59UDP-glucose 4-epimerase OS=Corynebacterium diphthe... [more]
YFNG_BACSU4.825e-1428.73Putative sugar dehydratase/epimerase yfnG OS=Bacil... [more]
GALE_METJA6.302e-1434.48Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
Y1055_METJA8.230e-1430.39Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
ARAE1_ARATH8.230e-1428.33UDP-arabinose 4-epimerase 1 OS=Arabidopsis thalian... [more]
GALE_YERPE1.075e-1330.91UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE... [more]
GALE_BACSU1.075e-1330.67UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]

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Properties
Property NameValue
Genbank descriptionC32004E12EF DevOvary1 Citrus clementina cDNA clone C32004E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876421 ID=FC876421; Name=FC876421; organism=Citrus clementina; type=EST; length=706bp
GACTCTTCAAAAGATCACTGCGGTTTCTTCTCAGTTTCCATTTTCAACAC
AGTTTCTCTCTCTAGATTCGCGTTTTGGCATTTGGGTTTGACTCGTCTTC
GTTGATCTGATCGTCTTTAAGTTGATTTGCAATGGCTACGTATACCCCGA
AGAACATCCTCATCACTGGGGCTGCTGGGTTCATTGCTTCCCATGTATGC
AACCGGCTGATTCGTAACTATCCCGAGTACAAAATTGTTGTGCTTGACAA
GCTTGATTATTGTTCGAATCTGAAAAACCTAATACCCTCCAAAGCATCCT
CCAACTTTAAGTTTGTTAAGGGGGACATTGCCAGTGCTGACCTTGTCAAC
TTTCTTCTCATCACTGAGTCCATTGACACTATTATGCACTTTGCTGCGCA
AACTCATGTGGACAACTCTTTTGGAAATAGTTTTGAGTTTACCAAGAACA
ATATCTATGGTACTCATGTCCTCCTTGAAGCCTGCAAAGTGACTGGGCAG
ATCCGGAGGTTCATCCATGTCAGCACAGATGAGGTCTATGGGGAGACTGA
CGAGGATGCTGTTGTGGGTAACCATGAAGCTTCCCAACTCCTGCCAACAA
ATCCTTATTCTGCAACTAAAGCTGGAGCAGAAATGCTTGTTATGGCTTAT
GGTAGGTCATATGGGCTACCAGTGATACACCCGTGGAAAACATGTTATGG
ACCAAT
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