FC876424

Overview
NameFC876424
Unique NameFC876424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KINH_NEUCR (Kinesin heavy chain OS=Neurospora crassa GN=kin PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.077e-36
Identity = 88/202 (43.56%), Postives = 126/202 (62.38%), Query Frame = 3
Query:   51 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA-SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLKQDEKETKKLQDNLQS 653
            V GL E  V   +EV+E+++ G   R+V +TN N+ SSRSH +  +T+  +N+  G      L+LVDLAGSE+VGK    G+ L+E++ INKSLSALG VI+AL   KS H+PYR+SKLT ILQ SLGG+ +T + +  SPSS +  ET  +L F  R + I++  A+  +++S   + KQM  K K      +    NL+S
Sbjct:  169 VKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKN-KAKVNAELSPA-ELKQMLAKAKTQITSFENYIVNLES 368          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KLP3_CAEEL (Kinesin-like protein klp-3 OS=Caenorhabditis elegans GN=klp-3 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.325e-36
Identity = 86/184 (46.74%), Postives = 115/184 (62.50%), Query Frame = 3
Query:   12 LEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGI--ESGPARKQ 557
            L I+Q  EG +  +PGL E  V   EEV E L  G + ++V +T AN  SSRSH ++RV V   NLI    T   L LVDLAGSERV +    G+ LKE+Q INKSLS LG+V+ AL     HIP+RN +LT IL+ SL GD KTL+ V +SP +  L E+  S+NFA ++  +  +SG  +++
Sbjct:  393 LAIRQTEEGRSS-IPGLEEVSVNSAEEVTETLARGRKNKAVAATEANIESSRSHVIVRVLVSATNLITKATTVGRLNLVDLAGSERVSQTNATGQLLKEAQAINKSLSELGNVVLALRQNQKHIPFRNCQLTRILEDSLNGDSKTLVIVHLSPDAKSLNESISSVNFAEKIGQVFTKSGTMKRE 575          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KIF5A_HUMAN (Kinesin heavy chain isoform 5A OS=Homo sapiens GN=KIF5A PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.186e-35
Identity = 89/202 (44.06%), Postives = 123/202 (60.89%), Query Frame = 3
Query:   51 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA-SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDISELF--KYKQMAEKLKQDEKETKKLQDNL 647
            V G TE  V   EE+ +++  G   R V  TN NE SSRSH +  + +K EN+   QK    L+LVDLAGSE+V K   +G  L E++ INKSLSALG+VISALA     ++PYR+SK+T ILQ SLGG+C+T MF+  SPSS +  ET  +L F  R + I++  +      +E +  KY++  EK K  ++   KL+  L
Sbjct:  166 VKGCTERFVSSPEEILDVIDEGKSNRHVAVTNMNEHSSRSHSIFLINIKQENMETEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKSYVPYRDSKMTRILQDSLGGNCRTTMFICCSPSSYNDAETKSTLMFGQRAKTIKNTASVNLELTAEQWKKKYEKEKEKTKAQKETIAKLEAEL 367          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KAR3_YEAST (Kinesin-like protein KAR3 OS=Saccharomyces cerevisiae GN=KAR3 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.186e-35
Identity = 89/175 (50.86%), Postives = 112/175 (64.00%), Query Frame = 3
Query:    9 KLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA---SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRV 524
            K EI+   E  T  +  +T  ++   E V  +LK   ++RS  ST +NE SSRSH +  + + G N   G  +   L LVDLAGSER+   +V G+RL+E+Q INKSLS LGDVI AL    S   HIP+RNSKLT++LQ SL GD KTLMFV ISPSSS + ET  SL FAS+V
Sbjct:  546 KHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 720          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KIF5A_MOUSE (Kinesin heavy chain isoform 5A OS=Mus musculus GN=Kif5a PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.549e-35
Identity = 89/202 (44.06%), Postives = 123/202 (60.89%), Query Frame = 3
Query:   51 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA-SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDISELF--KYKQMAEKLKQDEKETKKLQDNL 647
            V G TE  V   EE+ +++  G   R V  TN NE SSRSH +  + +K EN+   QK    L+LVDLAGSE+V K   +G  L E++ INKSLSALG+VISALA     ++PYR+SK+T ILQ SLGG+C+T MF+  SPSS +  ET  +L F  R + I++  +      +E +  KY++  EK K  ++   KL+  L
Sbjct:  166 VKGCTERFVSSPEEILDVIDEGKSNRHVAVTNMNEHSSRSHSIFLINIKQENVETEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKSYVPYRDSKMTRILQDSLGGNCRTTMFICCSPSSYNDAETKSTLMFGQRAKTIKNTASVNLELTAEQWKKKYEKEKEKTKAQKETIAKLEAEL 367          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: CTK2_XENLA (Carboxy-terminal kinesin 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.023e-35
Identity = 85/167 (50.90%), Postives = 108/167 (64.67%), Query Frame = 3
Query:   51 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPAR 551
            V  L   +V   EEV ELLK     RSV  T  N+ SSRSH + ++ ++GEN     KT S + L+DLAGSER+ +    G+RLKE+Q IN SLS LG VI++L +K  HIPYRNSKLT++LQ+SLGG+ K LMFV ISP   +  E+  SL FAS+V     G AR
Sbjct:  473 VTNLRYVKVSCVEEVHELLKIAKANRSVAKTAINDRSSRSHSVFQLKIEGENKQRDLKTSSMISLIDLAGSERLDRSLSTGDRLKETQCINTSLSTLGMVITSLCNKDSHIPYRNSKLTYLLQNSLGGNAKVLMFVNISPLEENFAESLNSLRFASKVNECVIGTAR 639          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KIF5A_RAT (Kinesin heavy chain isoform 5A OS=Rattus norvegicus GN=Kif5a PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.508e-35
Identity = 88/202 (43.56%), Postives = 122/202 (60.40%), Query Frame = 3
Query:   51 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA-SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDISELF--KYKQMAEKLKQDEKETKKLQDNL 647
            V G TE  V   EE+ +++  G   R V  TN NE SSRSH +  + +K EN+   QK    L+L DLAGSE+V K   +G  L E++ INKSLSALG+VISALA     ++PYR+SK+T ILQ SLGG+C+T MF+  SPSS +  ET  +L F  R + I++  +      +E +  KY++  EK K  ++   KL+  L
Sbjct:  166 VRGCTERFVSSPEEILDVIDEGKSNRHVAVTNMNEHSSRSHSIFLINIKQENIETEQKLSGKLYLADLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKSYVPYRDSKMTRILQDSLGGNCRTTMFICCSPSSYNDAETKSTLMFGQRAKTIKNTASVNLELTAEQWKKKYEKEKEKTKAQKETIAKLEAEL 367          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KINH_SYNRA (Kinesin heavy chain OS=Syncephalastrum racemosum PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.887e-35
Identity = 84/189 (44.44%), Postives = 123/189 (65.08%), Query Frame = 3
Query:   51 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA-SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLKQD 614
            V GL E  V  T+EV+E+++ G+  R V  TN N  SSRSH ++  T+  +N+  G      L+LVDLAGSE+VGK    G+ L+E++ INKSL+ALG VI+AL   KS H+PYR+SKLT ILQ SLGG+ +T + +  SPSS +  ET  +L F +R + I++  A+  +D+S   + K + +K+K +
Sbjct:  168 VKGLLEVYVGSTDEVYEVMRRGSNNRVVAYTNMNAESSRSHSIVMFTITQKNVDTGAAKSGKLYLVDLAGSEKVGKTGASGQTLEEAKKINKSLTALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNEAETLSTLRFGARAKSIKN-KAKVNADLSPA-ELKALLKKVKSE 354          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KINH_GIBMO (Kinesin heavy chain OS=Gibberella moniliformis GN=KLP1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.887e-35
Identity = 84/204 (41.18%), Postives = 127/204 (62.25%), Query Frame = 3
Query:   51 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA-SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLKQDEKETKKLQDNLQSVQ 659
            V GL E  V   +EV+E+++ G   R+V +TN N+ SSRSH +  +T+  +N+  G      L+LVDLAGSE+VGK    G+ L+E++ INKSLSALG VI+AL   KS HIPYR+SKLT ILQ SLGG+ +T + +  SPSS +  ET  +L F  R + I++  A+  +++S      ++   LK+ + +    +  + S++
Sbjct:  168 VKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHIPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLGTLRFGMRAKSIKN-KAKVNAELSP----AELKSLLKKAQGQVTNFESYISSLE 366          
BLAST of FC876424 vs. ExPASy Swiss-Prot
Match: KINH_DROME (Kinesin heavy chain OS=Drosophila melanogaster GN=Khc PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.004e-34
Identity = 84/208 (40.38%), Postives = 130/208 (62.50%), Query Frame = 3
Query:   51 VPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVTVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALA-SKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETPCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLKQDEKETKKLQDNLQSVQLRLA 671
            V G TE  V   E+V+E+++ G   R +  TN NE SSRSH +  + VK ENL N +K    L+LVDLAGSE+V K   +G  L E++ INKSLSALG+VISALA     HIPYR+SKLT ILQ SLGG+ +T + +  SP+S +  ET  +L+F  R + +++        ++E    ++   + ++++++  +L+  ++ +++ LA
Sbjct:  172 VKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVC-----VNEELTAEEWKRRYEKEKEKNARLKGKVEKLEIELA 374          
The following BLAST results are available for this feature:
BLAST of FC876424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
KINH_NEUCR4.077e-3643.56Kinesin heavy chain OS=Neurospora crassa GN=kin PE... [more]
KLP3_CAEEL5.325e-3646.74Kinesin-like protein klp-3 OS=Caenorhabditis elega... [more]
KIF5A_HUMAN1.186e-3544.06Kinesin heavy chain isoform 5A OS=Homo sapiens GN=... [more]
KAR3_YEAST1.186e-3550.86Kinesin-like protein KAR3 OS=Saccharomyces cerevis... [more]
KIF5A_MOUSE1.549e-3544.06Kinesin heavy chain isoform 5A OS=Mus musculus GN=... [more]
CTK2_XENLA2.023e-3550.90Carboxy-terminal kinesin 2 OS=Xenopus laevis PE=2 ... [more]
KIF5A_RAT4.508e-3543.56Kinesin heavy chain isoform 5A OS=Rattus norvegicu... [more]
KINH_SYNRA5.887e-3544.44Kinesin heavy chain OS=Syncephalastrum racemosum P... [more]
KINH_GIBMO5.887e-3541.18Kinesin heavy chain OS=Gibberella moniliformis GN=... [more]
KINH_DROME1.004e-3440.38Kinesin heavy chain OS=Drosophila melanogaster GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004F03EF DevOvary1 Citrus clementina cDNA clone C32004F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876424 ID=FC876424; Name=FC876424; organism=Citrus clementina; type=EST; length=673bp
CTCCTAAGAAGTTGGAGATAAAGCAAGCAGCAGAAGGTGGTACCCAAGAA
GTGCCAGGACTCACTGAAGCTCAAGTATATGGTACAGAGGAAGTGTGGGA
GCTACTTAAGTCTGGAGCCAGAGTTAGATCTGTTGGATCCACCAATGCCA
ATGAGCTCAGTAGCCGGTCTCACTGCTTGTTGCGAGTAACTGTGAAGGGG
GAGAATCTGATAAATGGGCAGAAGACTAAGAGTCACCTCTGGCTGGTAGA
CTTGGCAGGCAGTGAACGTGTGGGGAAGATTGAAGTTGATGGTGAGAGGT
TGAAGGAATCTCAGTTTATAAATAAATCTCTCTCTGCACTTGGTGATGTT
ATATCTGCTCTGGCATCTAAATCAGGCCACATTCCGTACAGGAACTCGAA
GCTCACTCATATTTTGCAGAGCTCTCTAGGTGGAGATTGCAAGACTCTGA
TGTTTGTCCAGATCAGCCCAAGTTCTTCAGACCTTGGAGAGACCCCTTGT
TCACTGAATTTTGCCAGCCGAGTTCGGGGAATTGAAAGTGGTCCTGCTCG
GAAACAATCAGACATTTCTGAACTTTTTAAGTACAAGCAAATGGCAGAAA
AGTTAAAGCAGGATGAGAAGGAGACGAAGAAGTTGCAGGACAATTTGCAG
TCTGTACAATTAAGGCTCGCTGC
back to top