FC876426

Overview
NameFC876426
Unique NameFC876426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10358 contig Ccv1_Contig10358:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PPE1_HUMAN (Serine/threonine-protein phosphatase with EF-hands 1 OS=Homo sapiens GN=PPEF1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 43/127 (33.86%), Postives = 68/127 (53.54%), Query Frame = 3
Query:  333 KQVQLTEAE-IRQLCAASKEIFLSQPNLLELEAP----IKICGDVHGQFSDLLRLFEYGGYPPEAN-YLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRFNV 695
            K+ Q+  A  + ++   +K++    PN   ++      + ICGD+HG+  DL  +F   G P E N Y+F GD+VDRGK SIE + +L    + Y  +  L RG+HE   +N  YGF  E   ++ +
Sbjct:  129 KEQQILHAHYVLEVLFETKKVLKQMPNFTHIQTSPSKEVTICGDLHGKLDDLFLIFYKNGLPSERNPYVFNGDFVDRGKNSIEILMILCVSFLVYPNDLHLNRGNHEDFMMNLRYGFTKEILHKYKL 255          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: RDGC_DROME (Serine/threonine-protein phosphatase rdgC OS=Drosophila melanogaster GN=rdgC PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  360 IRQLCAASKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEAN-YLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRF 689
            +R+   + K++    P    +   + +CGD+HG+  DLL +    G P  +N Y+F GD+VDRGK+ +E + LLL+  + +    FL RG+HE + +N  YGF  E + ++
Sbjct:  129 LREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDDLLVVLHKNGLPSSSNPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFIREVESKY 239          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PPE1_RAT (Serine/threonine-protein phosphatase with EF-hands 1 OS=Rattus norvegicus GN=Ppef1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 44/127 (34.65%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  333 KQVQLTEAE-IRQLCAASKEIFLSQPNLLELEA----PIKICGDVHGQFSDLLRLFEYGGYPPEAN-YLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRFNV 695
            KQ Q   A  + ++   +++I    PN   ++      I ICGD+HG+  DL+ +F   G P E N Y+F GD+VDRG  S+E + +LL   + Y  +  L RG+HE   +N  YGF  E  +++ +
Sbjct:  130 KQQQTLHAHYVLEVLFEARKILKQMPNFTRIQTFPAKEITICGDLHGKLDDLMLIFYKNGLPSEKNPYVFNGDFVDRGNNSMEILMILLVSFLVYPTDLHLNRGNHEDFMMNLRYGFTKEILQKYKL 256          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PPE1_MOUSE (Serine/threonine-protein phosphatase with EF-hands 1 OS=Mus musculus GN=Ppef1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 43/127 (33.86%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  333 KQVQLTEAE-IRQLCAASKEIFLSQPNLLELEA----PIKICGDVHGQFSDLLRLFEYGGYPPEAN-YLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRFNV 695
            KQ Q+  A  + ++   ++++    PN   ++      I ICGD+HG+  DL+ +F   G P E N Y+F GD+VDRG  S+E + +LL   + Y  +  L RG+HE   +N  YGF  E  +++ +
Sbjct:  132 KQQQILHAHYVLEVLFEARKVLKQMPNFSHVKTFPAKEITICGDLHGKLDDLMLIFYKNGLPSENNPYVFNGDFVDRGNNSMEILMILLVCFLVYPSDLHLNRGNHEDFMMNLRYGFTKEILQKYKL 258          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PPP7L_ARATH (Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  366 QLCAASKEIFLSQPNLLELE---APIKICGDVHGQFSDLLRLFEYGGYPP-EANYLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRF 689
            +L   + +I   +PN + ++   A + + GD+HGQ  DLL L +  G+P  +  Y+F G+YVD G   +ET  LLL++KV      +LLRG HE  S   +YGF +E   ++
Sbjct:  630 ELVLFASKILKKEPNCVRIDSEKAEVVVVGDLHGQLHDLLYLMQDAGFPDGDRFYVFNGNYVDIGAWGLETFLLLLSWKVLLPARVYLLRGSHESESCTSMYGFKNEVLTKY 741          
BLAST of FC876426 vs. ExPASy Swiss-Prot
Match: PPP7_ARATH (Serine/threonine-protein phosphatase 7 OS=Arabidopsis thaliana GN=PP7 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 3
Query:  414 LELEAPIKICGDVHGQFSDLLRLFEYGGYPPEAN-YLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGHHECASINRIYGFYDECKRRF 689
            L+  + + + GD+HGQ  DLL L +  G+P +   Y+F GDYVDRG   +ET  +LL++KV   +  +LLRG+HE      +YGF  E   ++
Sbjct:   73 LDSVSNVVVVGDIHGQLHDLLFLLKDTGFPCQNRCYVFNGDYVDRGAWGLETFLVLLSWKVLMPDRVYLLRGNHESKYCTSMYGFEKEVLTKY 165          
The following BLAST results are available for this feature:
BLAST of FC876426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
PPE1_HUMAN4.705e-1433.86Serine/threonine-protein phosphatase with EF-hands... [more]
RDGC_DROME8.026e-1434.23Serine/threonine-protein phosphatase rdgC OS=Droso... [more]
PPE1_RAT8.026e-1434.65Serine/threonine-protein phosphatase with EF-hands... [more]
PPE1_MOUSE1.048e-1333.86Serine/threonine-protein phosphatase with EF-hands... [more]
PPP7L_ARATH1.369e-1336.61Serine/threonine-protein phosphatase 7 long form h... [more]
PPP7_ARATH1.159e-1239.78Serine/threonine-protein phosphatase 7 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC32004F06EF DevOvary1 Citrus clementina cDNA clone C32004F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876426 ID=FC876426; Name=FC876426; organism=Citrus clementina; type=EST; length=695bp
GATTATCATTCATCATTCATCTCACCTATGACCTATATCCTCTTTAACTC
CGTCAACTTCATCCACCGAGCGGGAAATGGCCGCCAACGATTCTCTCAAT
AATATGCCAAACTCCCCTTTCTCCGTCAACGGAATCTGTTGAATCCGAGA
CTCAACAAATCTAATACTCGGTTTTATAACACCGTCAGTATCTGATTTTA
TTCTTATTTTAGAAACATAAATTTCTAGGGTTTGTTTTATTTCGATATAA
GTATTTGTGTTTTTTGATGGACGAGACTGTGCTTGATGATATAATACGAC
GGCTCCTTGATGCGAAGAATGGGAGGACGACGAAGCAGGTGCAGCTCACG
GAGGCTGAAATACGGCAGCTTTGTGCTGCGTCCAAGGAGATATTCCTTAG
CCAGCCTAATCTTCTCGAGCTTGAAGCTCCTATAAAGATTTGTGGTGATG
TTCATGGTCAGTTTTCGGATCTTCTGCGTTTGTTTGAGTATGGTGGGTAC
CCACCTGAAGCAAATTATTTATTCCTCGGGGATTATGTTGATCGTGGTAA
GCAGAGTATAGAGACAATATGCTTGCTTCTTGCATACAAGGTCAAATATA
AGGAGAACTTTTTTCTTCTTAGGGGNCACCATGAATGTGCTTCCATCAAC
CGTATTTATGGTTTTTATGATGAGTGCAAGAGGAGGTTTAATGTT
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