FC876429

Overview
NameFC876429
Unique NameFC876429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876429_ssr520 microsatellite FC876429_ssr520:520..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15271 contig Ccv1_Contig15271:323..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIKA_CANTR (3-ketoacyl-CoA thiolase A, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.412e-35
Identity = 87/216 (40.28%), Postives = 122/216 (56.48%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVL--APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN--SISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDG 637
            VVIVAAYRTAI K  +G F+   ++ +L   LK  I+KT ++PS + D+ +G VL  A G+T   E R A   AG P T     VNR CSSGL A++D+A  IK G  + G+A G ESM+ N     V  +++P +    Q   CL+PMGIT+ENVA +F ++R+ QD                G FK EI+P+ + I+    G EK + +  D+G
Sbjct:   27 VVIVAAYRTAIGKGFKGSFRSVRSEFILTEFLKEFIKKTNIDPSLIEDVAIGNVLNQAAGAT---EHRGACLAAGIPYTAAFIAVNRFCSSGLMAISDIANKIKTGEIECGLAGGAESMSTNYRDPRVAPRIDPHLADDAQMEKCLIPMGITNENVANQFNISRERQDEFAAKSYNKAAKAVAAGAFKSEILPIRS-IIRNSDGTEKEIIVDTDEG 238          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIK_YEAST (3-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomyces cerevisiae GN=FOX3 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.282e-28
Identity = 80/197 (40.61%), Postives = 114/197 (57.87%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVI----EKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN--SISVVGQV-NPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIVAA R+AI K  +G FKD   D LL   L   I    E  R + + + ++  G VL  G+  A E R A   +G P + P   +NRQCSSGL AV D+A  IK G  DIG+A G+ESMT N  +++ +G + + +++   +A+ CL+PMGIT+ENVA  F ++R++QD                G F+DEI+P+
Sbjct:   36 VVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPI 231          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_BACSU (3-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fadA PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.418e-27
Identity = 76/215 (35.35%), Postives = 111/215 (51.63%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQV-NPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN---TKIVDPKTGVEKRVTISVDDG 637
            VIV+  RT + KAK+G       DDL A  +K  +++       + D+++G             R     AG P TVP  TVNR CSSGLQ++A  A  I  G YD  IA G ESM  + + ++G V  P + +  +A +  + MG T+E VA+++GV+R++QD                GKFKDEI+PV    T+I +    +EK+   S D+G
Sbjct:    5 VIVSGARTPVGKAKKGSLATVRPDDLGAICVKETLKRAGGYEGNIDDLIIGCATPEAEQGLNMARNIGALAGLPYTVPAITVNRYCSSGLQSIAYAAEKIMLGAYDTAIAGGAESM--SQVPMMGHVTRPNLALAEKAPEYYMSMGHTAEQVAKKYGVSREDQDAFAVRSHQNAAKALAEGKFKDEIVPVEVTVTEIGEDHKPMEKQFVFSQDEG 217          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THLA_STAAC (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain COL) GN=SACOL0426 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.042e-25
Identity = 77/225 (34.22%), Postives = 121/225 (53.78%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK-------IVDPKTGVEKRVTI 622
            VV+ AAYRT I     G FKD  A DL A +++ +I++T LNPSE+ ++++G VL  G  +    R+AA   G PETVP  TVN+ C SGL+++     +I  G  DI +A G+E+M+     VN+     ++  +  + +   D L        MGIT+EN+A+++G++R+EQD                G+F  EI+PV+         +V    GV + V++
Sbjct:    4 VVLAAAYRTPI-GVFGGAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAGQGQN-PARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPMLVNNSRFGFKMGHQSMVDSMVYDGLTDVFNQYHMGITAENLAEQYGISREEQDTFAVNSQQKAVRAQQNGEFDSEIVPVSIPQRKGEPIVVTKDEGVRENVSV 226          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THLA_STAAR (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0351 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.123e-24
Identity = 76/225 (33.78%), Postives = 120/225 (53.33%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK-------IVDPKTGVEKRVTI 622
            VV+ AAYRT I     G FKD  A DL A +++ +I++T LNPSE+ ++++G VL  G  +    R+AA   G PETVP  TVN+ C SGL+++     +I  G  DI +A G+E+M+     VN+     ++  +  + +   D L        MGIT+EN+ +++G++R+EQD                G+F  EI+PV+         +V    GV + V++
Sbjct:    4 VVLAAAYRTPI-GVFGGAFKDVPAYDLGATLIEHIIKETGLNPSEINEVIIGNVLQAGQGQN-PARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPMLVNNSRFGFKMGHQSMVDSMVYDGLTDVFNQYHMGITAENLVEQYGISREEQDTFAVNSQQKAVRAQQNGEFDSEIVPVSIPQRKGEPIVVTKDEGVRENVSV 226          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIL_CHRVO (Acetyl-CoA acetyltransferase OS=Chromobacterium violaceum GN=phaA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.123e-24
Identity = 80/201 (39.80%), Postives = 108/201 (53.73%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG-----QVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            V IVAA RTAI  +  GG     A +L A V+KA++EKT + P +V ++++G VL  GS +    R A   AG P T P  T+N  C SGL+AV   A AI AG  DI IA G ESM+++   + G     ++     + T   D L        MGIT+ENVA ++G+ R+EQD                GKF+DEI+PV
Sbjct:    3 VAIVAAQRTAI-GSFGGGLAKIPAPELGATVIKALLEKTGVKPEDVSEVILGQVLTAGSGQN-PARQALIKAGLPVTTPATTLNVVCGSGLRAVHLAAQAILAGDADIVIAGGQESMSLSPHILPGSRDGFRMGNAQLVDTMVNDGLTDAYNAYHMGITAENVAAKYGIGREEQDAFSLQSQQRAAAAQKAGKFRDEIVPV 201          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THLA_STAAB (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0304 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.467e-24
Identity = 76/225 (33.78%), Postives = 120/225 (53.33%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK-------IVDPKTGVEKRVTI 622
            VV+ AAYRT I     G FKD  A DL A +++ +I++T LNPSE+ ++++G VL  G  +    R+AA   G PETVP+ TVN+ C SGL+++     +I  G  DI +A G+E+M+     VN+     ++  +  + +   D L        MGIT+EN+ +++G++R+EQD                G F  EI+PV+         +V    GV + V++
Sbjct:    4 VVLAAAYRTPI-GVFGGAFKDVPAYDLGATLIEHIIKETGLNPSEINEVIIGNVLQAGQGQN-PARIAAMKGGLPETVPVFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPMLVNNSRFGFKMGHQSMVDSMVYDGLTDVFNQYHMGITAENLVEQYGISREEQDTFAVNSQKKAANAQQNGGFDSEIVPVSIPQRKGEPIVVTKDEGVRENVSV 226          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THLA_STAA8 (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00336 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.467e-24
Identity = 76/225 (33.78%), Postives = 120/225 (53.33%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK-------IVDPKTGVEKRVTI 622
            VV+ AAYRT I     G FKD  A DL A +++ +I++T LNPSE+ ++++G VL  G  +    R+AA   G PETVP  TVN+ C SGL+++     +I  G  DI +A G+E+M+     VN+     ++  +  + +   D L        MGIT+EN+ +++G++R+EQD                G+F  EI+PV+         +V    GV + V++
Sbjct:    4 VVLAAAYRTPI-GVFGGAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAGQGQN-PARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPMLVNNSRFGFKMGHQSMVDSMVYDGLTDVFNQYHMGITAENLVEQYGISREEQDTFAVNSQQKAVRAQQNGEFDSEIVPVSIPQRKGEPIVVTKDEGVRENVSV 226          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THLA_STAA3 (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0355 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.467e-24
Identity = 76/225 (33.78%), Postives = 120/225 (53.33%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK-------IVDPKTGVEKRVTI 622
            VV+ AAYRT I     G FKD  A DL A +++ +I++T LNPSE+ ++++G VL  G  +    R+AA   G PETVP  TVN+ C SGL+++     +I  G  DI +A G+E+M+     VN+     ++  +  + +   D L        MGIT+EN+ +++G++R+EQD                G+F  EI+PV+         +V    GV + V++
Sbjct:    4 VVLAAAYRTPI-GVFGGAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAGQGQN-PARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPMLVNNSRFGFKMGHQSMVDSMVYDGLTDVFNQYHMGITAENLVEQYGISREEQDTFAVNSQQKAVRAQQNGEFDSEIVPVSIPQRKGEPIVVTKDEGVRENVSV 226          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THLA_STAAW (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain MW2) GN=MW0330 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.916e-24
Identity = 76/225 (33.78%), Postives = 120/225 (53.33%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT-----VNSISVVGQVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK-------IVDPKTGVEKRVTI 622
            VV+ AAYRT I     G FKD  A DL A +++ +I++T LNPSE+ ++++G VL  G  +    R+AA   G PETVP  TVN+ C SGL+++     +I  G  DI +A G+E+M+     VN+     ++  +  + +   D L        MGIT+EN+ +++G++R+EQD                G+F  EI+PV+         +V    GV + V++
Sbjct:    4 VVLAAAYRTPI-GVFGGAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAGQGQN-PARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPMLVNNSRFGFKMGHQSMVDSMVYDGLTDVFNQYHMGITAENLVEQYGISREEQDTFAVNSQQKAVRAQQNGEFDSEIVPVSIPQRKGEPILVTKDEGVRENVSV 226          
The following BLAST results are available for this feature:
BLAST of FC876429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
THIKA_CANTR2.412e-3540.283-ketoacyl-CoA thiolase A, peroxisomal OS=Candida ... [more]
THIK_YEAST1.282e-2840.613-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomy... [more]
FADA_BACSU2.418e-2735.353-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fa... [more]
THLA_STAAC5.042e-2534.22Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAR1.123e-2433.78Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THIL_CHRVO1.123e-2439.80Acetyl-CoA acetyltransferase OS=Chromobacterium vi... [more]
THLA_STAAB1.467e-2433.78Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAA81.467e-2433.78Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAA31.467e-2433.78Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAW1.916e-2433.78Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionC32004F09EF DevOvary1 Citrus clementina cDNA clone C32004F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876429 ID=FC876429; Name=FC876429; organism=Citrus clementina; type=EST; length=639bp
CGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCAAGGCGAAACGTG
GAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCACCTGTTCTGAAG
GCAGTGATAGAGAAAACGAGGTTGAATCCCAGCGAAGTAGGGGATATAGT
TGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGA
TGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTC
AACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGATGTTGCAACTGC
TATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGGATTGGAAAGCA
TGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAG
ATCTTTACTCAAGCTCGGGACTGTCTTCTTCCTATGGGTATCACTTCTGA
AAATGTTGCACAAAGATTTGGTGTGACACGACAAGAGCAAGACCTGGCTG
CCATTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTT
AAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGACCCAAAAACTGG
AGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAAT
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