FC876429

Overview
NameFC876429
Unique NameFC876429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIM_HUMAN (3-ketoacyl-CoA thiolase, mitochondrial OS=Homo sapiens GN=ACAA2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.782e-13
Identity = 57/204 (27.94%), Postives = 86/204 (42.16%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG-QVNPKVEIFTQARDCL----------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK 580
            V +VAA RT    A  G  KD  A DL     KA +   +++P  V  +++G VL   S      R      G P+  P  T+NR C SG Q++ +    I     ++ +  G ESM+     V   +   K+    +  D L          LPM +T+EN+A +  ++R+E D                G F DE+ P+  K
Sbjct:    7 VFVVAAKRTPF-GAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMSQAPYCVRNVRFGTKLGSDIKLEDSLWVSLTDQHVQLPMAMTAENLAVKHKISREECDKYALQSQQRWKAANDAGYFNDEMAPIEVK 209          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SHEB5 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.782e-13
Identity = 53/187 (28.34%), Postives = 89/187 (47.59%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEI 562
            VIV   RT + ++K G F++  A+ L A ++K ++ +  +L+P+ + D++ G V           R A+  AG P+T    TVNR C S + A+   A AI  G+ D  I  G+E M    + +   V+    +  +       MG+T+E + +  G+TR++QD                G+F  EI
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHM--GHVPMSHGVDFHPGLANKVAKASGMMGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEI 189          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PHOLL (3-ketoacyl-CoA thiolase OS=Photorhabdus luminescens subsp. laumondii GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.782e-13
Identity = 55/191 (28.80%), Postives = 89/191 (46.60%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVI+   RT + ++K G F+   A+DL A ++K + ++   +   E+ DI  G V           R AA  A  P +VP  TVNR C S +QA+ D A  I  G  ++ +  G+E M    ++     +PK+ +          MG+T+E +A+   ++R+ QD                G F +EI P+
Sbjct:    4 VVIIDGIRTPMGRSKGGAFRQVRAEDLSAHLMKKLFKRNPAIQQHEIDDIYWGCVQQTLEQGFNIARNAALLADIPHSVPAVTVNRLCGSSMQALHDGARMIMTGEANVTLIGGVEHMGHVPMTHGVDFHPKMSL--SVAKAAGVMGLTAEMLAKIHHISREMQDEFALRSHQRATQATQSGAFANEISPI 192          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SHESW (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain W3-18-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 53/187 (28.34%), Postives = 88/187 (47.06%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEI 562
            VIV   RT + ++K G F++  A+ L A ++K ++ +  +L+P+ + D++ G V           R A+  AG P+T    TVNR C S + A+   A AI  G+ D  I  G+E M    + +   V+    +          MG+T+E + +  G+TR++QD                G+F  EI
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHM--GHVPMSHGVDFHPGLANNVAKASGMMGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATIEGRFAKEI 189          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SHESR (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-7) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 52/190 (27.37%), Postives = 90/190 (47.37%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VIV   RT + ++K G F++  A+ L A ++K ++ +  +L+P+ + D++ G V           R A+  AG P+T    TVNR C S ++A+   A AI  G+ D  I  G+E M    + +   V+    +          MG+T+E + +  G++R++QD                G+F  EI  +
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNAIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHM--GHVPMNHGVDFHPGLANNVAKASGMMGLTAEMLGKLHGISREQQDAFAVRSHQRAHAATVEGRFAKEIYAI 192          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SHEPC (3-ketoacyl-CoA thiolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 53/187 (28.34%), Postives = 88/187 (47.06%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEI 562
            VIV   RT + ++K G F++  A+ L A ++K ++ +  +L+P+ + D++ G V           R A+  AG P+T    TVNR C S + A+   A AI  G+ D  I  G+E M    + +   V+    +          MG+T+E + +  G+TR++QD                G+F  EI
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHM--GHVPMSHGVDFHPGLANNVAKASGMMGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEI 189          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_SHEB8 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS185) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 53/187 (28.34%), Postives = 88/187 (47.06%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEI 562
            VIV   RT + ++K G F++  A+ L A ++K ++ +  +L+P+ + D++ G V           R A+  AG P+T    TVNR C S + A+   A AI  G+ D  I  G+E M    + +   V+    +          MG+T+E + +  G+TR++QD                G+F  EI
Sbjct:    5 VIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHM--GHVPMSHGVDFHPGLANNVAKASGMMGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEI 189          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIM_PONAB (3-ketoacyl-CoA thiolase, mitochondrial OS=Pongo abelii GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.288e-12
Identity = 55/204 (26.96%), Postives = 88/204 (43.14%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM--------TVNSISVVG---QVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK 580
            V +VAA RT    A  G  KD  A DL     KA +   +++P  V  +++G VL   S      R      G P+  P  T+NR C SG Q++ +    I     ++ +  G ESM        TV   + +G   ++   + +    +   LP+ +T+EN+A +  ++R+E D                G F DE+ P+  K
Sbjct:    7 VFVVAAKRTPF-GAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMSQAPYCVRTVRFGTKLGSDIKLEDSLWVSLTDQHVQLPIAMTAENLAVKHKISREECDKYALQSQQRWKAANDAGYFNDEMAPIEVK 209          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: VRAB_STAAR (Putative acetyl-CoA C-acetyltransferase vraB OS=Staphylococcus aureus (strain MRSA252) GN=vraB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.682e-12
Identity = 61/202 (30.20%), Postives = 95/202 (47.03%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT--------VNSI--SVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK 580
            VIVAA RTA  K   G  K    + LL P+ +   EK     S++ D+V+G V+  G   A   R A   AG  +++P  T++RQC SGL++V      I+AG   + IA G+ES +         +S+  + + +   +     +  D  +  G  +ENVA+ +GV+R+ QD                G    EI+P+  K
Sbjct:    5 VIVAAKRTAFGKYG-GTLKHLEPEQLLKPLFQHFKEKYPEVISKIDDVVLGNVVGNGGNIA---RKALLEAGLKDSIPGVTIDRQCGSGLESVQYACRMIQAGAGKVYIAGGVESTSRAPWKIKRPHSVYETALPEFYERASFAPEMSDPSMIQG--AENVAKMYGVSRELQDEFAYRSHQLTAENVKNGNISQEILPITVK 200          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIM_MOUSE (3-ketoacyl-CoA thiolase, mitochondrial OS=Mus musculus GN=Acaa2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.682e-12
Identity = 55/204 (26.96%), Postives = 87/204 (42.65%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG-QVNPKVEIFTQARDCL----------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK 580
            V IVAA RT    A  G  KD  A DL     +A +   ++ P  +  ++VG V+   S  A   R      G P      T+NR C SG Q++      I +   ++ +  G ESM+ +   V   +   K  +  +  D L          LPMG+T+EN+A ++ ++R++ D                G F +E+ P+  K
Sbjct:    7 VFIVAAKRTPF-GAYGGLLKDFSATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDAAYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMSQSPYCVRNVRFGTKFGLDLKLEDTLWAGLTDQHVKLPMGMTAENLAAKYNISREDCDRYALQSQQRWKAANEAGYFNEEMAPIEVK 209          
The following BLAST results are available for this feature:
BLAST of FC876429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
THIM_HUMAN5.782e-1327.943-ketoacyl-CoA thiolase, mitochondrial OS=Homo sap... [more]
FADA_SHEB55.782e-1328.343-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADA_PHOLL5.782e-1328.803-ketoacyl-CoA thiolase OS=Photorhabdus luminescen... [more]
FADA_SHESW7.552e-1328.343-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHESR7.552e-1327.373-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHEPC7.552e-1328.343-ketoacyl-CoA thiolase OS=Shewanella putrefaciens... [more]
FADA_SHEB87.552e-1328.343-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
THIM_PONAB1.288e-1226.963-ketoacyl-CoA thiolase, mitochondrial OS=Pongo ab... [more]
VRAB_STAAR1.682e-1230.20Putative acetyl-CoA C-acetyltransferase vraB OS=St... [more]
THIM_MOUSE1.682e-1226.963-ketoacyl-CoA thiolase, mitochondrial OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionC32004F09EF DevOvary1 Citrus clementina cDNA clone C32004F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876429 ID=FC876429; Name=FC876429; organism=Citrus clementina; type=EST; length=639bp
CGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCAAGGCGAAACGTG
GAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCACCTGTTCTGAAG
GCAGTGATAGAGAAAACGAGGTTGAATCCCAGCGAAGTAGGGGATATAGT
TGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGA
TGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTC
AACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGATGTTGCAACTGC
TATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGGATTGGAAAGCA
TGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAG
ATCTTTACTCAAGCTCGGGACTGTCTTCTTCCTATGGGTATCACTTCTGA
AAATGTTGCACAAAGATTTGGTGTGACACGACAAGAGCAAGACCTGGCTG
CCATTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTT
AAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGACCCAAAAACTGG
AGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAAT
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