FC876429

Overview
NameFC876429
Unique NameFC876429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876429_ssr520 microsatellite FC876429_ssr520:520..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15271 contig Ccv1_Contig15271:323..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THLA_STAEQ (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0032 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.088e-19
Identity = 69/225 (30.67%), Postives = 115/225 (51.11%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG-----QVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK-------IVDPKTGVEKRVTI 622
            +V+  AYRT I     G FKD  A +L A V++ ++E ++++P+E+ ++++G VL  G  +    R+AA + G PE VP  TVN+ C SGL+A+     +I AG  +I IA G+ESM+ + + +       ++  +    +   D L        MGIT+EN+ +++ ++R+EQD                G F  EI+PV          I+    G+  + TI
Sbjct:    4 IVLAEAYRTPI-GVFGGVFKDIPAYELGATVIRQILEHSQIDPNEINEVILGNVLQAGQGQN-PARIAAIHGGVPEAVPSFTVNKVCGSGLKAIQLAYQSIVAGDNEIVIAGGMESMSQSPMLLKNSRFGFKMGNQTLEDSMIADGLTDKFNDYHMGITAENLVEQYQISRKEQDQFAFDSQQKASRAQQAGVFDAEIVPVEVPQRKGDPLIISQDEGIRPQTTI 226          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: ATOB_ECOLI (Acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=atoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19
Identity = 71/202 (35.15%), Postives = 103/202 (50.99%), Query Frame = 2
Query:    5 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFT-QARDCLL-----------PMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVN 574
            VIV+A RTAI  +  G    T A DL A V+KA IE+ +++   V ++++G VL  G  +    R A   +G  ETV   TVN+ C SGL++VA  A AI+AG     +A G+E+M++    +  +      +   Q  D +L            MGIT+ENVA+ +G+TR+ QD                G F  EI+PVN
Sbjct:    5 VIVSAVRTAI-GSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQN-PARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVN 204          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIL_CHRVI (Acetyl-CoA acetyltransferase OS=Chromatium vinosum GN=phbA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 67/202 (33.17%), Postives = 104/202 (51.49%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTL-ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLL-----------PMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            +VIV A R+AI     GG   +L A ++   VLK ++ +T L P ++ ++++G VL  G  +    R    +AG P +VP  T+N+ C SGL+AV     AI  G  DI IA G ESM+ +S  +    + +       +D ++            MG T+EN+AQ++G TR++QD                G+F+DEIIP+
Sbjct:    5 IVIVDAGRSAI--GTFGGSLSSLSATEIGTAVLKGLLARTGLAPEQIDEVILGQVLTAGVGQN-PARQTTLHAGLPHSVPAMTINKVCGSGLKAVHLAMQAIACGDADIVIAGGQESMSQSSHVLPRSRDGQRMGDWSMKDTMIVDGLWDAFNNYHMGTTAENIAQKYGFTREQQDAFAAASQQKTEAAQKAGRFQDEIIPI 203          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSEE4 (3-ketoacyl-CoA thiolase OS=Pseudomonas entomophila (strain L48) GN=fadA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 61/191 (31.94%), Postives = 99/191 (51.83%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QDL               GKFKDEIIP+
Sbjct:    8 VVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKIDPKEVEDVIWGCVNQTMEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVIGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGVRSHQLAHKATVEGKFKDEIIPM 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSEPK (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain KT2440) GN=fadA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.134e-19
Identity = 61/191 (31.94%), Postives = 99/191 (51.83%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QDL               GKFKDEIIP+
Sbjct:    8 VVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGLRSHQLAHKATVEGKFKDEIIPM 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSEP1 (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fadA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.134e-19
Identity = 61/191 (31.94%), Postives = 99/191 (51.83%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QDL               GKFKDEIIP+
Sbjct:    8 VVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGLRSHQLAHKATVEGKFKDEIIPM 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSEOL (3-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans GN=fadA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.134e-19
Identity = 61/191 (31.94%), Postives = 99/191 (51.83%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QDL               GKFKDEIIP+
Sbjct:    8 VVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGLRSHQLAHKATVEGKFKDEIIPM 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSEPU (3-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=fadA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.399e-19
Identity = 61/191 (31.94%), Postives = 99/191 (51.83%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QDL               GKFKDEIIP+
Sbjct:    8 VVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVIGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGVRSHQLAHKATVEGKFKDEIIPM 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.203e-18
Identity = 61/191 (31.94%), Postives = 100/191 (52.36%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPV 571
            VVIV   RT + ++K G  ++T A+D+ A ++  ++E+ T+++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QD                GKFKDEIIP+
Sbjct:    8 VVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNTKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQDAFGVRSHQLAHKATVEGKFKDEIIPM 196          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIL_YARLI (Acetyl-CoA acetyltransferase OS=Yarrowia lipolytica GN=PAT1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.680e-18
Identity = 70/201 (34.83%), Postives = 102/201 (50.75%), Query Frame = 2
Query:    8 IVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQ----VNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTK 580
            IV A RT + K   G  K   A DL     KA ++++++   ++ + + G VL   S +A   R      GFPE+V   T+N+ CSSGL+ VA  A AIKAG  ++ +A G+ESM+ N+    G+     N K+E  +  +D L      + MG   EN  +R G+TR++QD                G FKDEI+PV  K
Sbjct:   13 IVGAARTPVGKFN-GALKSVSAIDLGITAAKAAVQRSKVPADQIDEFLFGQVLTANSGQA-PARQVVIKGGFPESVEATTINKVCSSGLKTVALAAQAIKAGDRNVIVAGGMESMS-NTPYYSGRGLVFGNQKLE-DSIVKDGLWDPYNNIHMGNCCENTNKRDGITREQQDEYAIESYRRANESIKNGAFKDEIVPVEIK 209          
The following BLAST results are available for this feature:
BLAST of FC876429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
THLA_STAEQ1.088e-1930.67Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
ATOB_ECOLI2.424e-1935.15Acetyl-CoA acetyltransferase OS=Escherichia coli (... [more]
THIL_CHRVI3.165e-1933.17Acetyl-CoA acetyltransferase OS=Chromatium vinosum... [more]
FADA_PSEE43.165e-1931.943-ketoacyl-CoA thiolase OS=Pseudomonas entomophila... [more]
FADA_PSEPK4.134e-1931.943-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEP14.134e-1931.943-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEOL4.134e-1931.943-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans ... [more]
FADA_PSEPU5.399e-1931.943-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=f... [more]
FADA_PSEPF1.203e-1831.943-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
THIL_YARLI2.680e-1834.83Acetyl-CoA acetyltransferase OS=Yarrowia lipolytic... [more]

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Properties
Property NameValue
Genbank descriptionC32004F09EF DevOvary1 Citrus clementina cDNA clone C32004F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876429 ID=FC876429; Name=FC876429; organism=Citrus clementina; type=EST; length=639bp
CGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCAAGGCGAAACGTG
GAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCACCTGTTCTGAAG
GCAGTGATAGAGAAAACGAGGTTGAATCCCAGCGAAGTAGGGGATATAGT
TGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGA
TGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTC
AACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGATGTTGCAACTGC
TATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGGATTGGAAAGCA
TGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAG
ATCTTTACTCAAGCTCGGGACTGTCTTCTTCCTATGGGTATCACTTCTGA
AAATGTTGCACAAAGATTTGGTGTGACACGACAAGAGCAAGACCTGGCTG
CCATTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTT
AAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGACCCAAAAACTGG
AGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAAT
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