FC876438 | Citrus Genome Database

Overview


Name	FC876438
Unique Name	FC876438
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	576

Libraries


Library Name	Type
DevOvary1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_LACPL (S-adenosylmethionine synthetase OS=Lactobacillus plantarum GN=metK PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.822e-39
Identity = 76/129 (58.91%), Postives = 94/129 (72.87%), Query Frame = 2

Query:   83 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP------EEIGAGDSG 451
            E  LFTSESV+EGHPDK+ DQISDAILDA L QDP ++VA ET   T LV+VFGE++TKA V+ +K+VRDT ++IG+V    G D DNC VLV +++QSPDIAQGV   L  R       ++IGAGD G
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDAMLAQDPQARVAVETSVTTGLVLVFGEVSTKAYVDIQKVVRDTIKSIGYVDGQYGFDGDNCAVLVSLDEQSPDIAQGVDDSLETRSGDADPLDQIGAGDQG 131

HSP 2 Score: 27.7202 bits (60), Expect = 9.822e-39
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QG MFGYA +ETPE +
Sbjct:  130 QGMMFGYAINETPELM 145

HSP 3 Score: 23.483 bits (49), Expect = 9.822e-39
Identity = 9/22 (40.91%), Postives = 15/22 (68.18%), Query Frame = 1

Query:  511 LATQLGAKLTEVRKNGTCTWMR 576
            L+ +L  K+  +RK+GT  W+R
Sbjct:  151 LSHRLMRKIAALRKDGTIKWLR 172

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_ANASK (S-adenosylmethionine synthetase OS=Anaeromyxobacter sp. (strain K) GN=metK PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.194e-38
Identity = 74/125 (59.20%), Postives = 90/125 (72.00%), Query Frame = 2

Query:   77 PMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            P++ FLFTSESV EGHPDK+ DQISDA+LDA L QDP  +VACET  KT  VM+ GEITTKA ++Y K+ R+T R IG+ S D+G DA+ C VLV ++QQSPDI QGV        +  GAGD G
Sbjct:    2 PLQDFLFTSESVTEGHPDKMADQISDAVLDAVLRQDPKGRVACETLLKTGYVMIAGEITTKARIDYPKLARETVRRIGYTSGDMGFDANTCAVLVAVDQQSPDIGQGV--------DTGGAGDQG 118

HSP 2 Score: 29.6462 bits (65), Expect = 1.194e-38
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QG MFGYA DETPE +
Sbjct:  117 QGMMFGYACDETPELM 132

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_ANADE (S-adenosylmethionine synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=metK PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.194e-38
Identity = 74/125 (59.20%), Postives = 90/125 (72.00%), Query Frame = 2

Query:   77 PMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            P++ FLFTSESV EGHPDK+ DQISDA+LDA L QDP  +VACET  KT  VM+ GEITTKA ++Y K+ R+T R IG+ S D+G DA+ C VLV ++QQSPDI QGV        +  GAGD G
Sbjct:    2 PLQDFLFTSESVTEGHPDKMADQISDAVLDAVLRQDPKGRVACETLLKTGYVMIAGEITTKARIDYPKLARETVRRIGYTSGDMGFDANTCAVLVAVDQQSPDIGQGV--------DTGGAGDQG 118

HSP 2 Score: 29.6462 bits (65), Expect = 1.194e-38
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QG MFGYA DETPE +
Sbjct:  117 QGMMFGYACDETPELM 132

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_ANAD2 (S-adenosylmethionine synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=metK PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.194e-38
Identity = 74/125 (59.20%), Postives = 90/125 (72.00%), Query Frame = 2

Query:   77 PMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            P++ FLFTSESV EGHPDK+ DQISDA+LDA L QDP  +VACET  KT  VM+ GEITTKA ++Y K+ R+T R IG+ S D+G DA+ C VLV ++QQSPDI QGV        +  GAGD G
Sbjct:    2 PLQDFLFTSESVTEGHPDKMADQISDAVLDAVLRQDPKGRVACETLLKTGYVMIAGEITTKARIDYPKLARETVRRIGYTSGDMGFDANTCAVLVAVDQQSPDIGQGV--------DTGGAGDQG 118

HSP 2 Score: 29.6462 bits (65), Expect = 1.194e-38
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFI 494
            QG MFGYA DETPE +
Sbjct:  117 QGMMFGYACDETPELM 132

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_HUMAN (S-adenosylmethionine synthetase isoform type-1 OS=Homo sapiens GN=MAT1A PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.640e-38
Identity = 73/121 (60.33%), Postives = 94/121 (77.69%), Query Frame = 2

Query:   89 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            F+FTSESV EGHPDK+CDQISDA+LDA L+QDP++KVACET  KT +V++ GEIT+ A V+Y+++VRDT ++IG+     G D   C VLV +EQQSPDIAQ V  HL +  E++GAGD G
Sbjct:   18 FMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVGAGDQG 136

HSP 2 Score: 28.1054 bits (61), Expect = 2.640e-38
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  447 QGHMFGYATDETPE 488
            QG MFGYATDET E
Sbjct:  135 QGLMFGYATDETEE 148

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK4_CAEEL (Probable S-adenosylmethionine synthetase 4 OS=Caenorhabditis elegans GN=sams-4 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.479e-38
Identity = 73/125 (58.40%), Postives = 93/125 (74.40%), Query Frame = 2

Query:   77 PMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            P   FLFTSESV+EGHPDK+CDQISDA+LDA L QDP +KVACET TKT ++M+ GEIT+KA V+Y+ +VR+  + IG+     G D   C VLV +EQQSP+IA GV  H+ K  +++GAGD G
Sbjct:    2 PQHKFLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGV--HVDKDSDDVGAGDQG 124

HSP 2 Score: 28.1054 bits (61), Expect = 4.479e-38
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  447 QGHMFGYATDETPE 488
            QG MFGYATDET E
Sbjct:  123 QGIMFGYATDETEE 136

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_BOVIN (S-adenosylmethionine synthetase isoform type-1 OS=Bos taurus GN=MAT1A PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.906e-38
Identity = 72/121 (59.50%), Postives = 94/121 (77.69%), Query Frame = 2

Query:   89 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            F+FTSESV EGHPDK+CDQISDA+LDA L+QDP++KVACET  KT +V++ GEIT+ A V+Y+++VR+T ++IG+     G D   C VLV +EQQSPDIAQ V  HL +  E++GAGD G
Sbjct:   19 FMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMVDYQRVVRETIQHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCV--HLDRNEEDVGAGDQG 137

HSP 2 Score: 28.1054 bits (61), Expect = 9.906e-38
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  447 QGHMFGYATDETPE 488
            QG MFGYATDET E
Sbjct:  136 QGLMFGYATDETEE 149

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK3_CAEEL (Probable S-adenosylmethionine synthetase 3 OS=Caenorhabditis elegans GN=sams-3 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.189e-37
Identity = 72/121 (59.50%), Postives = 92/121 (76.03%), Query Frame = 2

Query:   89 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            FLFTSESV+EGHPDK+CDQISDA+LDA L QDP +KVACET TKT ++M+ GEIT+KA V+Y+ +VR+  + IG+     G D   C VLV +EQQSP+IA GV  H+ K  +++GAGD G
Sbjct:    6 FLFTSESVSEGHPDKMCDQISDAVLDAHLAQDPHAKVACETVTKTGMIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGV--HVDKDSDDVGAGDQG 124

HSP 2 Score: 28.1054 bits (61), Expect = 2.189e-37
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  447 QGHMFGYATDETPE 488
            QG MFGYATDET E
Sbjct:  123 QGIMFGYATDETEE 136

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_TREPS (S-adenosylmethionine synthetase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=metK PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.190e-37
Identity = 78/125 (62.40%), Postives = 93/125 (74.40%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHG-HLSKRPEEIGAGDSG 451
            METF FTSESV+EGHPDKLCDQISDA+LDACL QDP S VACET   T+L+++ GEI+T+A++N  +I RD   +IG+VS DVGLDA +  VL     QSPDIAQGVHG  L +     GAGD G
Sbjct:    1 METF-FTSESVSEGHPDKLCDQISDAVLDACLSQDPHSCVACETFASTSLILIGGEISTRAHINLTQIARDVAADIGYVSADVGLDAASMAVLDMTHHQSPDIAQGVHGAGLKEFAGSQGAGDQG 124

HSP 2 Score: 28.1054 bits (61), Expect = 2.190e-37
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFIASESCSCH 518
            QG MFG+A  ETPEF+ +     H
Sbjct:  123 QGIMFGFACRETPEFMPAPLMCAH 146

[Close]

BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_TREPA (S-adenosylmethionine synthetase OS=Treponema pallidum GN=metK PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.190e-37
Identity = 78/125 (62.40%), Postives = 93/125 (74.40%), Query Frame = 2

Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHG-HLSKRPEEIGAGDSG 451
            METF FTSESV+EGHPDKLCDQISDA+LDACL QDP S VACET   T+L+++ GEI+T+A++N  +I RD   +IG+VS DVGLDA +  VL     QSPDIAQGVHG  L +     GAGD G
Sbjct:    1 METF-FTSESVSEGHPDKLCDQISDAVLDACLSQDPHSCVACETFASTSLILIGGEISTRAHINLTQIARDVAADIGYVSADVGLDAASMAVLDMTHHQSPDIAQGVHGAGLKEFAGSQGAGDQG 124

HSP 2 Score: 28.1054 bits (61), Expect = 2.190e-37
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 3

Query:  447 QGHMFGYATDETPEFIASESCSCH 518
            QG MFG+A  ETPEF+ +     H
Sbjct:  123 QGIMFGFACRETPEFMPAPLMCAH 146

The following BLAST results are available for this feature:

BLAST of FC876438 vs. ExPASy Swiss-Prot

BLAST of FC876438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK_LACPL	9.822e-39	58.91	S-adenosylmethionine synthetase OS=Lactobacillus p...	[more]
METK_ANASK	1.194e-38	59.20	S-adenosylmethionine synthetase OS=Anaeromyxobacte...	[more]
METK_ANADE	1.194e-38	59.20	S-adenosylmethionine synthetase OS=Anaeromyxobacte...	[more]
METK_ANAD2	1.194e-38	59.20	S-adenosylmethionine synthetase OS=Anaeromyxobacte...	[more]
METK1_HUMAN	2.640e-38	60.33	S-adenosylmethionine synthetase isoform type-1 OS=...	[more]
METK4_CAEEL	4.479e-38	58.40	Probable S-adenosylmethionine synthetase 4 OS=Caen...	[more]
METK1_BOVIN	9.906e-38	59.50	S-adenosylmethionine synthetase isoform type-1 OS=...	[more]
METK3_CAEEL	2.189e-37	59.50	Probable S-adenosylmethionine synthetase 3 OS=Caen...	[more]
METK_TREPS	2.190e-37	62.40	S-adenosylmethionine synthetase OS=Treponema palli...	[more]
METK_TREPA	2.190e-37	62.40	S-adenosylmethionine synthetase OS=Treponema palli...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32004G08EF DevOvary1 Citrus clementina cDNA clone C32004G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC876438 ID=FC876438; Name=FC876438; organism=Citrus clementina; type=EST; length=576bp
CCCCCCTCTATATTTCCTTTCTCGGGGGAGATTTCTCTCAATTCTAGATC
TAGCCGGTTCGCAGTTTTTGAAGTCCCCCATGGAGACTTTTTTGTTCACT
TCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTC
CGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGG
CTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATC
ACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCG
CAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTA
AGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTT
CATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATTCAGG
GGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATTGCCTCT
GAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGCA
AGAATGGCACTTGCACTTGGATGAGG