FC876438

Overview
NameFC876438
Unique NameFC876438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_VIBCM (S-adenosylmethionine synthetase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.897e-36
Identity = 74/120 (61.67%), Postives = 88/120 (73.33%), Query Frame = 2 
Query:   92 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            LFTSESV+EGHPDK+ DQISDA+LDA  EQDP ++VACET  KT +VMV GEITT A V+ E+I R T R IG+V  D+G DA++C VL  I +QSPDI QGV       P+E GAGD G
Sbjct:    6 LFTSESVSEGHPDKIADQISDAVLDAIFEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEEITRQTVREIGYVHSDMGFDANSCAVLNTIGKQSPDINQGVD---KADPKEQGAGDQG 122

HSP 2 Score: 25.7942 bits (55), Expect = 6.897e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  143 AHRLMQRQAEVRKNGTLPWLR 163

HSP 3 Score: 24.6386 bits (52), Expect = 6.897e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  121 QGIMFGYATNET 132
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_VIBC3 (S-adenosylmethionine synthetase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.897e-36
Identity = 74/120 (61.67%), Postives = 88/120 (73.33%), Query Frame = 2 
Query:   92 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            LFTSESV+EGHPDK+ DQISDA+LDA  EQDP ++VACET  KT +VMV GEITT A V+ E+I R T R IG+V  D+G DA++C VL  I +QSPDI QGV       P+E GAGD G
Sbjct:    6 LFTSESVSEGHPDKIADQISDAVLDAIFEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEEITRQTVREIGYVHSDMGFDANSCAVLNTIGKQSPDINQGVD---KADPKEQGAGDQG 122

HSP 2 Score: 25.7942 bits (55), Expect = 6.897e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  143 AHRLMQRQAEVRKNGTLPWLR 163

HSP 3 Score: 24.6386 bits (52), Expect = 6.897e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  121 QGIMFGYATNET 132
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_SHISS (S-adenosylmethionine synthetase OS=Shigella sonnei (strain Ss046) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_SHIFL (S-adenosylmethionine synthetase OS=Shigella flexneri GN=metK PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_SHIF8 (S-adenosylmethionine synthetase OS=Shigella flexneri serotype 5b (strain 8401) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_SHIDS (S-adenosylmethionine synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_SHIBS (S-adenosylmethionine synthetase OS=Shigella boydii serotype 4 (strain Sb227) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_SHIB3 (S-adenosylmethionine synthetase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_KLEP7 (S-adenosylmethionine synthetase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_KLEP3 (S-adenosylmethionine synthetase OS=Klebsiella pneumoniae (strain 342) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
The following BLAST results are available for this feature:
BLAST of FC876438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_VIBCM6.897e-3661.67S-adenosylmethionine synthetase OS=Vibrio cholerae... [more]
METK_VIBC36.897e-3661.67S-adenosylmethionine synthetase OS=Vibrio cholerae... [more]
METK_SHISS6.898e-3660.48S-adenosylmethionine synthetase OS=Shigella sonnei... [more]
METK_SHIFL6.898e-3660.48S-adenosylmethionine synthetase OS=Shigella flexne... [more]
METK_SHIF86.898e-3660.48S-adenosylmethionine synthetase OS=Shigella flexne... [more]
METK_SHIDS6.898e-3660.48S-adenosylmethionine synthetase OS=Shigella dysent... [more]
METK_SHIBS6.898e-3660.48S-adenosylmethionine synthetase OS=Shigella boydii... [more]
METK_SHIB36.898e-3660.48S-adenosylmethionine synthetase OS=Shigella boydii... [more]
METK_KLEP76.898e-3660.48S-adenosylmethionine synthetase OS=Klebsiella pneu... [more]
METK_KLEP36.898e-3660.48S-adenosylmethionine synthetase OS=Klebsiella pneu... [more]

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Properties
Property NameValue
Genbank descriptionC32004G08EF DevOvary1 Citrus clementina cDNA clone C32004G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876438 ID=FC876438; Name=FC876438; organism=Citrus clementina; type=EST; length=576bp
CCCCCCTCTATATTTCCTTTCTCGGGGGAGATTTCTCTCAATTCTAGATC
TAGCCGGTTCGCAGTTTTTGAAGTCCCCCATGGAGACTTTTTTGTTCACT
TCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTC
CGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGG
CTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATC
ACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCG
CAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTA
AGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTT
CATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATTCAGG
GGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATTGCCTCT
GAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGCA
AGAATGGCACTTGCACTTGGATGAGG
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