FC876438

Overview
NameFC876438
Unique NameFC876438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_ECODH (S-adenosylmethionine synthetase OS=Escherichia coli (strain K12 / DH10B) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_ECOBW (S-adenosylmethionine synthetase OS=Escherichia coli (strain K12 / BW2952) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_ECO8A (S-adenosylmethionine synthetase OS=Escherichia coli O8 (strain IAI1) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_ECO7I (S-adenosylmethionine synthetase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_ECO5E (S-adenosylmethionine synthetase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_ECO57 (S-adenosylmethionine synthetase OS=Escherichia coli O157:H7 GN=metK PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_ECO55 (S-adenosylmethionine synthetase OS=Escherichia coli (strain 55989 / EAEC) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_ECO27 (S-adenosylmethionine synthetase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_ECO24 (S-adenosylmethionine synthetase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_CITK8 (S-adenosylmethionine synthetase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=metK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.898e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M   LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET  KT +V+V GEITT A V+ E+I R+T R IG+V  D+G DA++C VL  I +QSPDI QGV       P E GAGD G
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 121

HSP 2 Score: 25.7942 bits (55), Expect = 6.898e-36
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 1 
Query:  514 ATQLGAKLTEVRKNGTCTWMR 576
            A +L  +  EVRKNGT  W+R
Sbjct:  142 AHRLVQRQAEVRKNGTLPWLR 162

HSP 3 Score: 24.6386 bits (52), Expect = 6.898e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  447 QGHMFGYATDET 482
            QG MFGYAT+ET
Sbjct:  120 QGLMFGYATNET 131
The following BLAST results are available for this feature:
BLAST of FC876438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ECODH6.898e-3660.48S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECOBW6.898e-3660.48S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECO8A6.898e-3660.48S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECO7I6.898e-3660.48S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECO5E6.898e-3660.48S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECO576.898e-3660.48S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECO556.898e-3660.48S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECO276.898e-3660.48S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_ECO246.898e-3660.48S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_CITK86.898e-3660.48S-adenosylmethionine synthetase OS=Citrobacter kos... [more]

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Properties
Property NameValue
Genbank descriptionC32004G08EF DevOvary1 Citrus clementina cDNA clone C32004G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876438 ID=FC876438; Name=FC876438; organism=Citrus clementina; type=EST; length=576bp
CCCCCCTCTATATTTCCTTTCTCGGGGGAGATTTCTCTCAATTCTAGATC
TAGCCGGTTCGCAGTTTTTGAAGTCCCCCATGGAGACTTTTTTGTTCACT
TCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTC
CGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGG
CTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATC
ACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCG
CAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTA
AGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTT
CATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATTCAGG
GGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATTGCCTCT
GAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGCA
AGAATGGCACTTGCACTTGGATGAGG
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