FC876438

Overview
NameFC876438
Unique NameFC876438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:11..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK4_HORVU (S-adenosylmethionine synthetase 4 OS=Hordeum vulgare GN=SAM4 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 5.644e-74
Identity = 111/124 (89.52%), Postives = 119/124 (95.97%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            +ETFLFTSESVNEGHPDKLCDQISDA+LDACL +DPDSKVACETCTKTN+VMVFGEITTKANV+YEKIVRDTCR IGFVS+DVGLDAD+CKVLV IEQQSPDIAQGVHGH +KRPEEIGAGD G
Sbjct:    4 VETFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQG 127

HSP 2 Score: 47.3654 bits (111), Expect = 5.644e-74
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKN TC W+R
Sbjct:  144 SHVLATKLGARLTEVRKNATCPWLR 168

HSP 3 Score: 38.1206 bits (87), Expect = 5.644e-74
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 3 
Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPEF+
Sbjct:  126 QGHMFGYATDETPEFM 141
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK2_ORYSJ (S-adenosylmethionine synthetase 2 OS=Oryza sativa subsp. japonica GN=SAM2 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.644e-74
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 2 
Query:   83 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ETFLFTSESVNEGHPDKLCDQ+SDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCR IGFVSDDVGLDAD CKVLV IEQQSPDIAQGVHGH +KRPEEIGAGD G
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQG 126

HSP 2 Score: 50.0618 bits (118), Expect = 5.644e-74
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  143 SHVLATKLGARLTEVRKNGTCAWLR 167

HSP 3 Score: 35.8094 bits (81), Expect = 5.644e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  125 QGHMFGYATDETPELM 140
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.645e-74
Identity = 112/124 (90.32%), Postives = 120/124 (96.77%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            M+TFLFTSESVNEGHPDKLCDQISDAILDACLEQDP+SKVACETCTKTN+VM+FGEITTKAN++YEKIVRDTCR IGFVS DVGLDADNCKVLV IEQQSPDIAQGVHGHL+K+PEEIGAGD G
Sbjct:    1 MDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMIFGEITTKANIDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQG 124

HSP 2 Score: 46.595 bits (109), Expect = 5.645e-74
Identity = 19/25 (76.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLAT+LGA+LTEVRK+GTC W+R
Sbjct:  141 THVLATKLGARLTEVRKDGTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 5.645e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_GOSHI (S-adenosylmethionine synthetase OS=Gossypium hirsutum GN=SAMS PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 5.645e-74
Identity = 112/124 (90.32%), Postives = 118/124 (95.16%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQISDA+LDACL QDP+SKVACETC+KTN+VMVFGEITTKA+V+YEKIVRDTCR IGF SDDVGLDADNCK LV IEQQSPDIAQGVHGHLSKRPEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCSKTNMVMVFGEITTKADVDYEKIVRDTCRGIGFTSDDVGLDADNCKALVNIEQQSPDIAQGVHGHLSKRPEEIGAGDQG 124

HSP 2 Score: 48.521 bits (114), Expect = 5.645e-74
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  141 THVLATRLGARLTEVRKNGTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 5.645e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK3_CATRO (S-adenosylmethionine synthetase 3 OS=Catharanthus roseus GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.645e-74
Identity = 113/124 (91.13%), Postives = 118/124 (95.16%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQ+SDAILDACLEQDP+SKVACETCTKTN+VMVFGEITTKA VNYEKIVRDTCR IGF S DVGLDADNCKVLV IEQQSPDIAQGVHGHL+K+PEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKATVNYEKIVRDTCRGIGFTSPDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQG 124

HSP 2 Score: 46.595 bits (109), Expect = 5.645e-74
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLAT+LGAKLTEVRKN TC W+R
Sbjct:  141 THVLATKLGAKLTEVRKNKTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 5.645e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_MUSAC (S-adenosylmethionine synthetase OS=Musa acuminata GN=METK PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 9.576e-74
Identity = 109/123 (88.62%), Postives = 118/123 (95.93%), Query Frame = 2 
Query:   83 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            +TFLFTSESVNEGHPDKLCDQISDA+LDACLEQDPDSKVACETCTKTN+VMVFGEITTK N++YEKIVRDTCR+IGF S+DVGLDAD+CKVLV IEQQSPDIAQGVHGH +KRPEEIGAGD G
Sbjct:    3 DTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKGNIDYEKIVRDTCRDIGFTSEDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQG 125

HSP 2 Score: 49.6766 bits (117), Expect = 9.576e-74
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  142 SHVLATKLGARLTEVRKNGTCPWLR 166

HSP 3 Score: 35.8094 bits (81), Expect = 9.576e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  124 QGHMFGYATDETPELM 139
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 9.577e-74
Identity = 113/124 (91.13%), Postives = 119/124 (95.97%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            METFLFTSESVNEGHPDKLCDQ+SDAILDACLEQDP+SKVACETCTKTN+VMVFGEITTKA V+YEKIVRDTCR IGFVS DVGLDADNCKVLV IEQQSPDIAQGVHGHL+K+PEEIGAGD G
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQG 124

HSP 2 Score: 46.595 bits (109), Expect = 9.577e-74
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            +HVLAT+LGAKLTEVRKN TC W+R
Sbjct:  141 THVLATKLGAKLTEVRKNKTCPWLR 165

HSP 3 Score: 35.8094 bits (81), Expect = 9.577e-74
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  123 QGHMFGYATDETPELM 138
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK_WHEAT (S-adenosylmethionine synthetase OS=Triticum aestivum GN=SAMS PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.247e-73
Identity = 110/124 (88.71%), Postives = 119/124 (95.97%), Query Frame = 2 
Query:   80 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ++TFLFTSESVNEGHPDKLCDQISDA+LDACL +DPDSKVACETCTKTN+VMVFGEITTKANV+YEKIVRDTCR IGFVS+DVGLDAD+CKVLV IEQQSPDIAQGVHGH +KRPEEIGAGD G
Sbjct:    4 VDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQG 127

HSP 2 Score: 47.3654 bits (111), Expect = 1.247e-73
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKN TC W+R
Sbjct:  144 SHVLATKLGARLTEVRKNATCPWLR 168

HSP 3 Score: 38.1206 bits (87), Expect = 1.247e-73
Identity = 15/16 (93.75%), Postives = 16/16 (100.00%), Query Frame = 3 
Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPEF+
Sbjct:  126 QGHMFGYATDETPEFM 141
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK3_ATRNU (S-adenosylmethionine synthetase 3 OS=Atriplex nummularia GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.247e-73
Identity = 111/128 (86.72%), Postives = 121/128 (94.53%), Query Frame = 2 
Query:   68 LKSPMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            + + ++TFLFTSESVNEGHPDKLCDQISDA+LDACL QDP+SKVACETCTKTNLVMVFGEITTKANV+YEKIVR TCR+IGFVS DVGLDADNCKVLV IEQQSPDIAQGVHGHL++RPEEIGAGD G
Sbjct:    1 MAAAVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNLVMVFGEITTKANVDYEKIVRQTCRDIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTRRPEEIGAGDQG 128

HSP 2 Score: 49.6766 bits (117), Expect = 1.247e-73
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  145 SHVLATKLGARLTEVRKNGTCPWLR 169

HSP 3 Score: 35.8094 bits (81), Expect = 1.247e-73
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  127 QGHMFGYATDETPELM 142
[Close]
BLAST of FC876438 vs. ExPASy Swiss-Prot
Match: METK5_POPTR (S-adenosylmethionine synthetase 5 OS=Populus trichocarpa GN=METK5 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.247e-73
Identity = 112/123 (91.06%), Postives = 116/123 (94.31%), Query Frame = 2 
Query:   83 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDSG 451
            ETFLFTSESVNEGHPDKLCDQISDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTKA+V+YEKIVRDTCRNIGF S DVGLDADNCKVLV IEQQS DIAQGVHGH SKRPEEIGAGD G
Sbjct:    3 ETFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRNIGFTSADVGLDADNCKVLVNIEQQSSDIAQGVHGHFSKRPEEIGAGDQG 125

HSP 2 Score: 50.0618 bits (118), Expect = 1.247e-73
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:  502 SHVLATQLGAKLTEVRKNGTCTWMR 576
            SHVLAT+LGA+LTEVRKNGTC W+R
Sbjct:  142 SHVLATKLGARLTEVRKNGTCAWLR 166

HSP 3 Score: 35.8094 bits (81), Expect = 1.247e-73
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:  447 QGHMFGYATDETPEFI 494
            QGHMFGYATDETPE +
Sbjct:  124 QGHMFGYATDETPELM 139
The following BLAST results are available for this feature:
BLAST of FC876438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK4_HORVU5.644e-7489.52S-adenosylmethionine synthetase 4 OS=Hordeum vulga... [more]
METK2_ORYSJ5.644e-7490.24S-adenosylmethionine synthetase 2 OS=Oryza sativa ... [more]
METK1_PICSI5.645e-7490.32S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]
METK_GOSHI5.645e-7490.32S-adenosylmethionine synthetase OS=Gossypium hirsu... [more]
METK3_CATRO5.645e-7491.13S-adenosylmethionine synthetase 3 OS=Catharanthus ... [more]
METK_MUSAC9.576e-7488.62S-adenosylmethionine synthetase OS=Musa acuminata ... [more]
METK3_SOLLC9.577e-7491.13S-adenosylmethionine synthetase 3 OS=Solanum lycop... [more]
METK_WHEAT1.247e-7388.71S-adenosylmethionine synthetase OS=Triticum aestiv... [more]
METK3_ATRNU1.247e-7386.72S-adenosylmethionine synthetase 3 OS=Atriplex numm... [more]
METK5_POPTR1.247e-7391.06S-adenosylmethionine synthetase 5 OS=Populus trich... [more]

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Properties
Property NameValue
Genbank descriptionC32004G08EF DevOvary1 Citrus clementina cDNA clone C32004G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876438 ID=FC876438; Name=FC876438; organism=Citrus clementina; type=EST; length=576bp
CCCCCCTCTATATTTCCTTTCTCGGGGGAGATTTCTCTCAATTCTAGATC
TAGCCGGTTCGCAGTTTTTGAAGTCCCCCATGGAGACTTTTTTGTTCACT
TCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTGTGATCAGATCTC
CGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAGATAGCAAGGTGG
CTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATC
ACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCG
CAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTA
AGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTT
CATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATTCAGG
GGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATTGCCTCT
GAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGCA
AGAATGGCACTTGCACTTGGATGAGG
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