FC876441

Overview
NameFC876441
Unique NameFC876441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:47..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.231e-34
Identity = 81/170 (47.65%), Postives = 114/170 (67.06%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL------EPLVQTCMTTLNSKMV 592
            P +LL+  E  SR  G DA + N+ A K +A +LR+SLGPKG+DKML    GDVTITNDGATI++ M++ +  AKL+VE +++QD E+GDGTT  VV+AG+LLE+AE LL++ IHP  I EGY+ A   A+E L ++  + +  + DL      + L +   TTL SK +
Sbjct:    4 PVLLLK--EGTSRTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYNKALELLPQLGTRID--IKDLNSSVARDTLRKIAFTTLASKFI 169          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.231e-34
Identity = 77/162 (47.53%), Postives = 115/162 (70.99%), Query Frame = 2
Query:  131 KSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            K+R +  + +KAN+ A +AVA  +RTSLGPKGMDKM+++  G++ I+NDG TIL+QM + + +AK++VE+S +QD E GDGTT VV++ G+LL  AEKLL +GIHP  IAE ++ A + AVE L  ++++    L D   LV+   T+L+SK+V++    LA
Sbjct:   13 KNREKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIKTARGEILISNDGHTILKQMAILHPVAKMLVEVSAAQDSEAGDGTTSVVILTGALLGAAEKLLAKGIHPTIIAESFQRAGQRAVEVLLGMSKR--ISLQDRAELVRAASTSLSSKIVSQYSTFLA 172          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.526e-34
Identity = 81/170 (47.65%), Postives = 114/170 (67.06%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL------EPLVQTCMTTLNSKMV 592
            P +LL+  E  SR  G DA + N+ A K +A +LR+SLGPKG+DKML    GDVTITNDGATI++ M++ +  AKL+VE +++QD E+GDGTT  VV+AG+LLE+AE LL++ IHP  I EGY+ A   A+E L ++  + +  + DL      + L +   TTL SK +
Sbjct:    4 PVLLLK--EGTSRTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYTKALELLPQLGTRID--IRDLNSSVARDTLRKIAFTTLASKFI 169          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.526e-34
Identity = 76/166 (45.78%), Postives = 115/166 (69.28%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND-LEPLVQTCMTTLNSKM 589
            G+P I++   E+  R++  DAQ+ N+ A +AVA  +R++LGPKGMDKML    GDVTITNDG TIL++MD+DN  A+++VE++ +Q+ E GDGTT  V +AG LL+ AE LLE+ IHP  I  G+ +AS  A E ++ IA++ +    + L+ + +T MT  +S++
Sbjct:    8 GQPMIIMG--EDAQRVKDRDAQEYNIRAARAVAEAVRSTLGPKGMDKMLVDSMGDVTITNDGVTILKEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLEQDIHPTAIIRGFNLASEKAREEIDDIAERVDPDDEELLKKVAETSMTGKSSEL 171          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 9.426e-34
Identity = 77/172 (44.77%), Postives = 114/172 (66.28%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRR 610
            G P ++L+  E   R  G +A +AN+ A + +A +L++SLGP+G+DKML    GD+T+TNDGATI+++M++ +  AKL+VE++++QD E+GDGTT VVV+AG+LLE+AEKLL+  +HP  I EGY  A   A+  ++  A   E  + D   L +   TTL SK V     R
Sbjct:    5 GYPVLILK--EGTQRTYGREALRANILAARVLAEMLKSSLGPRGLDKMLVDAFGDITVTNDGATIVKEMEIQHPAAKLLVEVAKAQDAEVGDGTTSVVVLAGALLEKAEKLLDENLHPTIIIEGYTKAMEEALRLVDEAAVPVE--VEDDSVLRRIAETTLASKFVGTGPER 172          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPD_YARLI (T-complex protein 1 subunit delta OS=Yarrowia lipolytica GN=CCT4 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.426e-34
Identity = 77/162 (47.53%), Postives = 115/162 (70.99%), Query Frame = 2
Query:  131 KSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            K++ +  + +K+N+ A +AVA  +RTSLGPKGMDKM+Q+  G V I+NDG TIL+ M V +  AK++V+LS SQD   GDGTT VV++AGSLL  A+KLL++GIHP  IAE ++ A++ A E +  +++  +  L+D E L++   T+LNSK+V++    LA
Sbjct:   12 KNKEKPLEVRKSNILAARAVADAIRTSLGPKGMDKMIQTARGQVIISNDGNTILQHMAVMHPAAKMLVDLSASQDSVAGDGTTSVVILAGSLLGAADKLLKKGIHPSIIAENFQKAAQRAAEVVMDMSKPID--LSDRETLIRAASTSLNSKIVSQFSSTLA 171          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.100e-33
Identity = 77/174 (44.25%), Postives = 115/174 (66.09%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            G P I+L+  E  SR  G +A + N++A KAV   L+T+ GP+GMDKML    GD+TITNDGATIL++MD+ +  AKL+V++++ QD E  DGT   V+ +G L+++AE+LL + IHP  I  GY+ A  +A++ +E I+ K    +ND E L +  +T+L+SK V   +  LA
Sbjct:   13 GIPVIILK--EGSSRTYGKEALRINIAAVKAVEEALKTTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEELLYKEIHPTIIVSGYKKAEEMAIKTIEEISTK--VSVNDTEILRKVALTSLSSKAVAGAREHLA 182          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.100e-33
Identity = 77/174 (44.25%), Postives = 115/174 (66.09%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ +TNDGATIL+++D+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA + +   +D E L++   T++  K     +  LA
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVD--PDDEETLLKIAATSITGKNAESHKELLA 175          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.100e-33
Identity = 77/174 (44.25%), Postives = 115/174 (66.09%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ +TNDGATIL+++D+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA + +   +D E L++   T++  K     +  LA
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVD--PDDEETLLKIAATSITGKNAESHKELLA 175          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.743e-33
Identity = 76/164 (46.34%), Postives = 110/164 (67.07%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSK 586
            G+P ++LR  E   R  G DAQ+ N+ A + +A  +R++LGPKGMDKML    GDV ITNDG TIL+++DV++  AK+++E++++QD E+GDGTT  VV+AG LL++AE+LL++ IHP  IA GY  A+  A+E L  IA       +D E L +   T +  K
Sbjct:    6 GQPVLILR--EGTQRTVGRDAQRMNIMAARVIAEAVRSTLGPKGMDKMLVDSLGDVVITNDGVTILKEIDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQEIHPAIIANGYRYAAEKALEILNEIA--IPISKDDDEILKKIATTAMTGK 165          
The following BLAST results are available for this feature:
BLAST of FC876441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
THSA_SULSO4.231e-3447.65Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
TCPD_ASHGO4.231e-3447.53T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
THSA_SULSH5.526e-3447.65Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
THS2_HALVO5.526e-3445.78Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
THSA_AERPE9.426e-3444.77Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
TCPD_YARLI9.426e-3447.53T-complex protein 1 subunit delta OS=Yarrowia lipo... [more]
THSB_SULAC2.100e-3344.25Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]
THSA_THEK12.100e-3344.25Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO2.100e-3344.25Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
THSB_ARCFU2.743e-3346.34Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]

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Properties
Property NameValue
Genbank descriptionC32004G11EF DevOvary1 Citrus clementina cDNA clone C32004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876441 ID=FC876441; Name=FC876441; organism=Citrus clementina; type=EST; length=616bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
NCAGCGCAGATTGGCT
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