FC876444

Overview
NameFC876444
Unique NameFC876444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 51/147 (34.69%), Postives = 74/147 (50.34%), Query Frame = 1
Query:  226 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV 666
            +F++A+ AEF+A            I +  + +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLV 171          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 51/147 (34.69%), Postives = 73/147 (49.66%), Query Frame = 1
Query:  226 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV 666
            +F++A+ AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLV 171          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 51/147 (34.69%), Postives = 73/147 (49.66%), Query Frame = 1
Query:  226 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV 666
            +F++A+ AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV
Sbjct:   36 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPNVVG-GLGVTTVHGNLTAGHGLLVELIITFQLV 174          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 53/153 (34.64%), Postives = 77/153 (50.33%), Query Frame = 1
Query:  211 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAG-VGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV 666
            E T     +A +AEFI+            I Y   T+     DG A   G++  + A    +FV V   A ISGGH+NPAVTFG F+   ++L+R ++Y++AQ LG+I    L+     S    +G     L++G  +G  L  EI+ TF LV
Sbjct:   13 EATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTN-----DGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLV 155          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 51/147 (34.69%), Postives = 72/147 (48.98%), Query Frame = 1
Query:  226 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV 666
            +F++A+ AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ ++V Y+ AQCLGAI G G++           G G   +    S G GL  E+I TF LV
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLSAGHGLLVELIITFQLV 171          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 51/147 (34.69%), Postives = 72/147 (48.98%), Query Frame = 1
Query:  226 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV 666
            +F++A+ AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTMVHGNLTAGHGLLVELIITFQLV 171          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 56/148 (37.84%), Postives = 76/148 (51.35%), Query Frame = 1
Query:  235 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVG----LAAEIIGTFVLV 666
            RA +AEFI+            I +   TD        +G+    +A AFG  +FV V   A ISGGH+NPAVTFG+ L   ++L+R ++Y +AQ LG+++       F  S+ T   GG    A G S GVG    L  EI+ TF LV
Sbjct:   22 RAALAEFISTLIFVFAGSGSGIAFNKITDNGATTP--SGLVAAALAHAFG--LFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAA-----CFLLSFAT---GGEPIPAFGLSAGVGSLNALVFEIVMTFGLV 157          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 3.423e-13
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  367 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVGLAAEIIGTFVLV 666
            IA+ FG ++  L      +SG HINPAVT GL +   VS+++   Y+V+QC+GAI+G  ++KA   S     G G   +A G S G G+  E + TF+LV
Sbjct:   57 IAFTFGLVVATLAQAFGHVSGCHINPAVTIGLIVTADVSILKGAFYIVSQCIGAIAGAAVIKAATPSEVVG-GLGVTGIAPGLSTGQGVLIEALITFMLV 155          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 56/156 (35.90%), Postives = 76/156 (48.72%), Query Frame = 1
Query:  211 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSIGVG----LAAEIIGTFVLV 666
            EL+     +A +AEFI+            + +   TD      G    G++  + A    +FV V   A ISGGH+NPAVTFG F+   +SLV+AV+Y VAQ LG++    L+K           GGA   A   S GVG    +  EI+ TF LV
Sbjct:   13 ELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGG----GTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIAT--------GGAAVGAFSLSAGVGAWNAVVFEIVMTFGLV 156          
BLAST of FC876444 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  349 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYG---GGANELA-DGYSIGVGLAAEIIGT--FVLV*LSS 678
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI+   +  V A  K  ++  G    G  EL+  GYS+  GL  EII T  F+++ L S
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGS 150          
The following BLAST results are available for this feature:
BLAST of FC876444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
AQP4_DIPME1.815e-1434.69Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_RAT2.371e-1434.69Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL2.371e-1434.69Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
TIP1_MEDTR4.044e-1434.64Probable aquaporin TIP-type OS=Medicago truncatula... [more]
AQP4_BOVIN5.281e-1434.69Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP4_HUMAN6.897e-1434.69Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
TIP12_ARATH2.621e-1337.84Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
AQP_ANOGA3.423e-1341.00Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
TIP12_ORYSJ7.626e-1335.90Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
AQPZ_BRUME7.626e-1341.53Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32004H03EF DevOvary1 Citrus clementina cDNA clone C32004H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876444 ID=FC876444; Name=FC876444; organism=Citrus clementina; type=EST; length=742bp
GATCCAAAACAACCAAAAAAAACAAGAAAAAGAAAAAGGCTTCTCTCTCG
TTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGTTTCTCTCCAAA
TCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTGGCAGAGCAC
GGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGAGCCGCTATT
CGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGCCTTGATAGCTG
AGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTTGACTGTCATT
GGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGTGCCGG
CGTCGGCATCCTCGGTATCGCCTGGGCCTTCGGTGGCATGATCTTTGTCC
TCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACCCGGCAGTG
ACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGTGCTGTGAT
GTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGTGTTGGGTTGGTCA
AGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAACGAG
CTGGCCGATGGGTACAGCATAGGCGTTGGATTGGCCGCCGAGATCATCGG
CACCTTTGTGTTGGTTTAACTGTCTTCTCGGCCACTGATCCCAGAGAGCG
CCAGAGACTCCATGTCCCGTTTTGCACGCTCCCATGGATTGC
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