FC876447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y2081_STAAM (Probable DEAD-box ATP-dependent RNA helicase SAV2081 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2081 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F LG+++ VQ+ + +G + PTP+Q IP L+G D+LG AQTG+GKT AF +P++ ++ GV +L++ PTRELA Q+AEQ + G ++ V GGM + Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y2072_STAAC (Probable DEAD-box ATP-dependent RNA helicase SACOL2072 OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F LG+++ VQ+ + +G + PTP+Q IP L+G D+LG AQTG+GKT AF +P++ ++ GV +L++ PTRELA Q+AEQ + G ++ V GGM + Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y2037_STAA3 (Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2037 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F LG+++ VQ+ + +G + PTP+Q IP L+G D+LG AQTG+GKT AF +P++ ++ GV +L++ PTRELA Q+AEQ + G ++ V GGM + Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y2004_STAAW (Probable DEAD-box ATP-dependent RNA helicase MW2004 OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F LG+++ VQ+ + +G + PTP+Q IP L+G D+LG AQTG+GKT AF +P++ ++ GV +L++ PTRELA Q+AEQ + G ++ V GGM + Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y1985_STAAS (Probable DEAD-box ATP-dependent RNA helicase SAS1985 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F LG+++ VQ+ + +G + PTP+Q IP L+G D+LG AQTG+GKT AF +P++ ++ GV +L++ PTRELA Q+AEQ + G ++ V GGM + Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y1885_STAAN (Probable DEAD-box ATP-dependent RNA helicase SA1885 OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F LG+++ VQ+ + +G + PTP+Q IP L+G D+LG AQTG+GKT AF +P++ ++ GV +L++ PTRELA Q+AEQ + G ++ V GGM + Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RHLE_ECOLI (ATP-dependent RNA helicase rhlE OS=Escherichia coli (strain K12) GN=rhlE PE=1 SV=3) HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18 Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 3 Query: 288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-HRLAEDPYG-----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 ++F LGL+ ++ E G R PTP+Q IP +LEG+D++ AQTG+GKTA F LP+L H + P+ V AL++TPTRELA Q+ E + L++R VV GG+ + Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSI 115
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_HAEIN (Cold-shock DEAD box protein A homolog OS=Haemophilus influenzae GN=deaD PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18 Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = 3 Query: 288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 548 +TF LGL E+ ++ +LG P+P+Q CIP +L G DVLG+AQTGSGKTAAFALP+L ++ LV+ PTRELA Q+A+ Sbjct: 5 ITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVAD 91
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y1965_STAAB (Probable DEAD-box ATP-dependent RNA helicase SAB1965c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1965c PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F LG+++ VQ+ + +G + PTP+Q IP L+G D+LG AQTG+GKT AF +P++ ++ GV +L++ PTRELA Q+AEQ + G ++ V GGM + Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVW-KQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_GEOKA (DEAD-box ATP-dependent RNA helicase cshA OS=Geobacillus kaustophilus GN=cshA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.251e-18 Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 TF LGL++ ++ + +G TP+Q IP L+ KDV+G AQTG+GKTAAF +PI+ ++ V ALV+ PTRELA Q++E+ +G+ +R + GG D+ Sbjct: 3 TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDI 110 The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bpback to top |