FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_KLULA (ATP-dependent RNA helicase DBP10 OS=Kluyveromyces lactis GN=DBP10 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.552e-18
Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  219 NAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            N     L  + N   ++       +FA  GL++  +    + G R+PTP+Q   IP IL+ +D++G+A+TGSGKTAAF LP++ +L       GV A++++P+RELA Q    FK    G  LR  ++ GG  L
Sbjct:  103 NESDDDLNDYFNTTADAAAKHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSL 236          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_DEBHA (ATP-dependent RNA helicase DBP10 OS=Debaryomyces hansenii GN=DBP10 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.552e-18
Identity = 45/110 (40.91%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +F   G +++ +    + G ++PTP+Q   IP I+E +DV+G+A+TGSGKTAAF LP++ +L       GV A++++P+RELA Q  +Q K    G  LR  V++GG  L
Sbjct:   98 SFPSFGFSKFLLTNISKKGFKQPTPIQRKTIPLIMENRDVVGMARTGSGKTAAFTLPLVEKLKSHSPRVGVRAIILSPSRELASQTFKQVKEFSKGTDLRSIVLIGGDSL 207          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_ASHGO (ATP-dependent RNA helicase DBP10 OS=Ashbya gossypii GN=DBP10 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            +FA  GL+++ +      G R+PTP+Q   IP IL+ +D++G+A+TGSGKTAAF LP++ +L       G  A++++P+RELA Q  + FK    G +LR  ++ GG
Sbjct:  121 SFASFGLSKFILGNISRKGFRQPTPIQRKTIPLILQQRDIVGMARTGSGKTAAFVLPLIEKLKMHSAKIGARAMILSPSRELAMQTHKVFKEFAKGSNLRSVLLTGG 227          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_VANPO (ATP-dependent RNA helicase DBP10 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP10 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.615e-17
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +F   G ++  +    + G R+PTP+Q   IP IL+ +D++G+A+TGSGKTAAF LP++ +L       G  A++++P+RELA Q    FK    G HLR  ++ GG  L
Sbjct:  122 SFPSFGFSKLILSNVHKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKSHSSKIGARAVILSPSRELALQTHRVFKEFSKGTHLRSVLLTGGDSL 231          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_YEAST (ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae GN=DBP10 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +F   GL++  +   K  G R+PTP+Q   IP IL+ +D++G+A+TGSGKTAAF LP++ +L       G  A++++P+RELA Q    FK    G  LR  ++ GG  L
Sbjct:  138 SFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSL 247          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_YEAS7 (ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP10 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +F   GL++  +   K  G R+PTP+Q   IP IL+ +D++G+A+TGSGKTAAF LP++ +L       G  A++++P+RELA Q    FK    G  LR  ++ GG  L
Sbjct:  138 SFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSL 247          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_PICST (ATP-dependent RNA helicase DBP10 OS=Pichia stipitis GN=DBP10 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +F   GL++  +    + G R+PTP+Q   IP I+  +DV+G+A+TGSGKTAAF LP++ +L       G+ A++++P+RELA Q  +Q K    G  LR  V+ GG  L
Sbjct:  100 SFQSFGLSKLVLTNIAKKGYRQPTPIQRKTIPLIMANRDVVGMARTGSGKTAAFTLPVIEKLKGHSARVGIRAIILSPSRELALQTYKQVKEFSKGSDLRAIVLTGGDSL 209          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DRS1_CRYNE (ATP-dependent RNA helicase DRS1 OS=Cryptococcus neoformans GN=DRS1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.599e-17
Identity = 59/140 (42.14%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  222 AKTAQLEKFTNPDPNSTTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYG-----VLALVITPTRELAYQLAEQFKALG--SGLHLRCEVVVGGMDL 614
            A+ A+ + F + DP  TTTD T+  +F  + L+   ++    L    PTP+Q   IP  L G+D+LG A TGSGKTAAF +PIL RL     G        LV+ PTRELA Q     KAL    GL +R  ++VGG+ L
Sbjct:  200 AEIARKDAFFSSDP--TTTDPTLPSSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSL 337          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_BACLD (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.599e-17
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 3
Query:  285 TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            T+TF    L+    +  K +G    TP+Q   IP  L  KDV+G AQTG+GKTAAF +P++ ++  +   + A+VI PTRELA Q++E+   +G     R   + GG D+
Sbjct:    2 TITFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDI 111          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: PRP5_NEUCR (Pre-mRNA-processing ATP-dependent RNA helicase prp-5 OS=Neurospora crassa GN=prp-5 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  306 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-HRLAEDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            GL    + T + LG  +PTP+Q   +P I+ G+DV+G+A+TGSGKT AFALP+L H   +DP     G +AL++TPTREL  Q+    +     L LR     GG
Sbjct:  567 GLTRPILDTIESLGFEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLRHVKDQDPVTGDDGAIALIMTPTRELCTQIYSDLQPFAKALKLRVVAAYGG 671          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP10_KLULA5.552e-1836.57ATP-dependent RNA helicase DBP10 OS=Kluyveromyces ... [more]
DBP10_DEBHA5.552e-1840.91ATP-dependent RNA helicase DBP10 OS=Debaryomyces h... [more]
DBP10_ASHGO9.470e-1841.12ATP-dependent RNA helicase DBP10 OS=Ashbya gossypi... [more]
DBP10_VANPO1.615e-1740.00ATP-dependent RNA helicase DBP10 OS=Vanderwaltozym... [more]
DBP10_YEAST2.755e-1740.91ATP-dependent RNA helicase DBP10 OS=Saccharomyces ... [more]
DBP10_YEAS72.755e-1740.91ATP-dependent RNA helicase DBP10 OS=Saccharomyces ... [more]
DBP10_PICST2.755e-1740.91ATP-dependent RNA helicase DBP10 OS=Pichia stipiti... [more]
DRS1_CRYNE3.599e-1742.14ATP-dependent RNA helicase DRS1 OS=Cryptococcus ne... [more]
CSHA_BACLD3.599e-1739.09DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
PRP5_NEUCR4.700e-1743.81Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
back to top