FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DRS1_VANPO (ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.138e-17
Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  234 QLEKFTNPDPNSTTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLH-LRCEVVVGGMDL 614
            ++  F  P+  S+   STV  TF  L L+   ++   +LG  +P+P+Q+  IP  L GKD++  A TGSGKTAAF +PI+ RL   P  V +   +V+TPTRELA Q+A+  K +G  +  L   + VGG++L
Sbjct:  211 EMASFYAPESESSEATSTVHSTFNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNL 343          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_SCLS1 (ATP-dependent RNA helicase dbp10 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp10 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  +GL    ++     G   PTP+Q   IP +L+ +DV+G+A+TGSGKTAAF +P++ +L       G  AL+++P+RELA Q  +  K  G G  L+C ++VGG  L
Sbjct:   90 FQAMGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAAFVIPMIEKLRAHSVRVGARALIMSPSRELALQTLKVVKEFGRGTDLKCVLLVGGDSL 198          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_CHAGB (ATP-dependent RNA helicase DBP10 OS=Chaetomium globosum GN=DBP10 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 3
Query:  213 SKNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            S N KT  L+        S +   +  F  +GL    ++     G   PTP+Q   IP +LE +DV+G+A+TGSGKTAAF +P++ RL       G  A++++P+RELA Q  +  K LG G  L+  ++VGG  L
Sbjct:   69 SSNRKTGSLQ--------SKSAKKSGGFQAMGLNSNLLRAISRKGFSVPTPIQRKTIPLVLERRDVVGMARTGSGKTAAFVIPMIERLKAHSARVGARAIIMSPSRELALQTLKVVKELGKGTDLKTVLLVGGDSL 196          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16
Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 3
Query:  243 KFTNPDPNSTTTDSTVT----FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            K   PD    T D T T    F    L    +    E G  RP+P+Q   IP  L G+D+L  A+ G+GKTAAF +P+L ++ +D   + A++I PTRELA Q ++  K LG  L ++  V  GG  L
Sbjct:  112 KLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSL 239          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX46_RAT (Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus GN=Ddx46 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  306 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            G++   + + K+ G  +PTP+QT  IP I+ G+D++G+A+TGSGKT AF LP+       R  E+  G +A+++TPTRELA Q+ ++ K     L LR   V GG
Sbjct:  378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGG 482          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX46_PONAB (Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  306 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            G++   + + K+ G  +PTP+QT  IP I+ G+D++G+A+TGSGKT AF LP+       R  E+  G +A+++TPTRELA Q+ ++ K     L LR   V GG
Sbjct:  378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGG 482          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX46_MOUSE (Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  306 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            G++   + + K+ G  +PTP+QT  IP I+ G+D++G+A+TGSGKT AF LP+       R  E+  G +A+++TPTRELA Q+ ++ K     L LR   V GG
Sbjct:  378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGG 482          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX46_HUMAN (Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  306 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            G++   + + K+ G  +PTP+QT  IP I+ G+D++G+A+TGSGKT AF LP+       R  E+  G +A+++TPTRELA Q+ ++ K     L LR   V GG
Sbjct:  378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGG 482          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_NEUCR (ATP-dependent RNA helicase dbp-10 OS=Neurospora crassa GN=dbp-10 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16
Identity = 48/109 (44.04%), Postives = 66/109 (60.55%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  +GL    ++     G   PTP+Q   IP ILE KDV+G+A+TGSGKTAAF +P++ RL       G  AL+++P+RELA Q  +  K LG G  L+  ++VGG  L
Sbjct:  101 FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIERLKGHSPRVGSRALIMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSL 209          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_ASPCL (ATP-dependent RNA helicase dbp10 OS=Aspergillus clavatus GN=dbp10 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16
Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  +GL+   ++     G   PTP+Q   IP I++ +DV+G+A+TGSGKTAAF +P++ +L       G   L+++P+RELA Q  +  K LG G  L+C ++VGG  L
Sbjct:   91 FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEKLRSHSTKVGARGLILSPSRELALQTLKVVKELGKGTDLKCVLLVGGDSL 199          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DRS1_VANPO6.138e-1740.60ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma... [more]
DBP10_SCLS18.017e-1740.37ATP-dependent RNA helicase dbp10 OS=Sclerotinia sc... [more]
DBP10_CHAGB8.017e-1737.50ATP-dependent RNA helicase DBP10 OS=Chaetomium glo... [more]
RH8_ARATH1.047e-1638.28DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
DDX46_RAT1.047e-1641.90Probable ATP-dependent RNA helicase DDX46 OS=Rattu... [more]
DDX46_PONAB1.047e-1641.90Probable ATP-dependent RNA helicase DDX46 OS=Pongo... [more]
DDX46_MOUSE1.047e-1641.90Probable ATP-dependent RNA helicase DDX46 OS=Mus m... [more]
DDX46_HUMAN1.047e-1641.90Probable ATP-dependent RNA helicase DDX46 OS=Homo ... [more]
DBP10_NEUCR1.047e-1644.04ATP-dependent RNA helicase dbp-10 OS=Neurospora cr... [more]
DBP10_ASPCL1.047e-1640.37ATP-dependent RNA helicase dbp10 OS=Aspergillus cl... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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