FC876447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DRS1_VANPO (ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DRS1 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.138e-17 Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = 3 Query: 234 QLEKFTNPDPNSTTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLH-LRCEVVVGGMDL 614 ++ F P+ S+ STV TF L L+ ++ +LG +P+P+Q+ IP L GKD++ A TGSGKTAAF +PI+ RL P V + +V+TPTRELA Q+A+ K +G + L + VGG++L Sbjct: 211 EMASFYAPESESSEATSTVHSTFNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNL 343
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_SCLS1 (ATP-dependent RNA helicase dbp10 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp10 PE=3 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17 Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F +GL ++ G PTP+Q IP +L+ +DV+G+A+TGSGKTAAF +P++ +L G AL+++P+RELA Q + K G G L+C ++VGG L Sbjct: 90 FQAMGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAAFVIPMIEKLRAHSVRVGARALIMSPSRELALQTLKVVKEFGRGTDLKCVLLVGGDSL 198
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_CHAGB (ATP-dependent RNA helicase DBP10 OS=Chaetomium globosum GN=DBP10 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.017e-17 Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 3 Query: 213 SKNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP--YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 S N KT L+ S + + F +GL ++ G PTP+Q IP +LE +DV+G+A+TGSGKTAAF +P++ RL G A++++P+RELA Q + K LG G L+ ++VGG L Sbjct: 69 SSNRKTGSLQ--------SKSAKKSGGFQAMGLNSNLLRAISRKGFSVPTPIQRKTIPLVLERRDVVGMARTGSGKTAAFVIPMIERLKAHSARVGARAIIMSPSRELALQTLKVVKELGKGTDLKTVLLVGGDSL 196
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16 Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 3 Query: 243 KFTNPDPNSTTTDSTVT----FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 K PD T D T T F L + E G RP+P+Q IP L G+D+L A+ G+GKTAAF +P+L ++ +D + A++I PTRELA Q ++ K LG L ++ V GG L Sbjct: 112 KLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSL 239
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX46_RAT (Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus GN=Ddx46 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16 Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3 Query: 306 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 G++ + + K+ G +PTP+QT IP I+ G+D++G+A+TGSGKT AF LP+ R E+ G +A+++TPTRELA Q+ ++ K L LR V GG Sbjct: 378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGG 482
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX46_PONAB (Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16 Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3 Query: 306 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 G++ + + K+ G +PTP+QT IP I+ G+D++G+A+TGSGKT AF LP+ R E+ G +A+++TPTRELA Q+ ++ K L LR V GG Sbjct: 378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGG 482
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX46_MOUSE (Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16 Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3 Query: 306 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 G++ + + K+ G +PTP+QT IP I+ G+D++G+A+TGSGKT AF LP+ R E+ G +A+++TPTRELA Q+ ++ K L LR V GG Sbjct: 378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGG 482
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX46_HUMAN (Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16 Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3 Query: 306 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 G++ + + K+ G +PTP+QT IP I+ G+D++G+A+TGSGKT AF LP+ R E+ G +A+++TPTRELA Q+ ++ K L LR V GG Sbjct: 378 GISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGG 482
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_NEUCR (ATP-dependent RNA helicase dbp-10 OS=Neurospora crassa GN=dbp-10 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16 Identity = 48/109 (44.04%), Postives = 66/109 (60.55%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F +GL ++ G PTP+Q IP ILE KDV+G+A+TGSGKTAAF +P++ RL G AL+++P+RELA Q + K LG G L+ ++VGG L Sbjct: 101 FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIERLKGHSPRVGSRALIMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSL 209
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_ASPCL (ATP-dependent RNA helicase dbp10 OS=Aspergillus clavatus GN=dbp10 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16 Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F +GL+ ++ G PTP+Q IP I++ +DV+G+A+TGSGKTAAF +P++ +L G L+++P+RELA Q + K LG G L+C ++VGG L Sbjct: 91 FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEKLRSHSTKVGARGLILSPSRELALQTLKVVKELGKGTDLKCVLLVGGDSL 199 The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bpback to top |