FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Pichia stipitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 40/110 (36.36%), Postives = 57/110 (51.82%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            TF   G  E+ +   K  G   PT +Q    P  L G+D++G+A TGSGKT ++ LP +  +   P      G + LV+ PTRELA Q+ ++    GS   +R   V GG
Sbjct:   98 TFDEAGFPEYVLNEVKAQGFPSPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPAIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGG 207          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: SPB4_ENCCU (ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon cuniculi GN=SPB4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  336 KELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +E G  + T VQ  CIP++L+GKDV+  + TG+GKT AF  PIL  + +       GV A+VITPTRELA Q+ E    +     ++CE  +GGM +
Sbjct:   20 EENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVTAVVITPTRELALQIRE----VAGLFDVKCECFIGGMSI 112          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 47/123 (38.21%), Postives = 60/123 (48.78%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-------------------HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            F   GL E  ++     G   PTPVQ + +P  L G+D++  AQTGSGKTAAF LP++                   +R A  P    ALV+ PTRELA Q+ E+ K       LR  V  GG
Sbjct:   86 FEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKP---RALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGG 205          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH51_ARATH (DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis thaliana GN=RH51 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 3
Query:  282 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            + VTF  L L+E      KE+G +  T +Q   I  +LEGKDVLG A+TGSGKT AF +P +  L ++ +    G   +VI PTRELA Q     + L         +V+GG
Sbjct:   87 TNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGG 198          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: PRP5_MAGGR (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Magnaporthe grisea GN=PRP5 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  306 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL-----AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            GL    +    +L   +PT +Q   +P I+ G+DV+G+A+TGSGKT AF LP+   +      +D  G + L++TPTRELA Q+    K     L LR     GG
Sbjct:  384 GLTRPILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNEGPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGG 488          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: PRP5_CANGA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida glabrata GN=PRP5 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 37/91 (40.66%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  360 TPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH------RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            TP+QT  IP I+ G+DV+G+++TGSGKT ++ LP++       +L     G +A++  PTRELA Q+ E+ + L S L +      GG DL
Sbjct:  276 TPIQTQTIPAIMSGRDVIGISKTGSGKTISYLLPMIRHVKAQKKLRNGETGPIAVIFAPTRELAVQINEEVQKLISDLDISSICCTGGSDL 366          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: PRP28_COCIM (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides immitis GN=PRP28 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  306 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----------GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            GL +  ++   ++G + P+P+Q   IP  L+ +D++G+A TGSGKTAAF LP+L  +AE P           G  A+++ PTRELA Q+  + +   + L      +VGG  L
Sbjct:  383 GLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSL 495          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: MAK5_SCHPO (ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces pombe GN=mak5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  300 GLGLAEWA--------VQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE--DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 608
            G+ ++ WA        + +  + G  +P P+Q+  IP+   G D++G A TGSGKT AF +PIL       D   V ALV+ PTRELA+Q+ + F+ +    ++R   + GG+
Sbjct:  118 GVDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGL 230          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 37/123 (30.08%), Postives = 66/123 (53.66%), Query Frame = 3
Query:  237 LEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            LE+       S   ++  +F  + L    ++     G  RP+ +Q   I  +++G DV+  AQ+G+GKTA F++ +L +L  +     AL++ PTRELA Q+ +   A+G  +++ C   +GG
Sbjct:    8 LEEIQEGQIESNYDETVDSFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGG 130          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 37/123 (30.08%), Postives = 66/123 (53.66%), Query Frame = 3
Query:  237 LEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            LE+       S   ++  +F  + L    ++     G  RP+ +Q   I  +++G DV+  AQ+G+GKTA F++ +L +L  +     AL++ PTRELA Q+ +   A+G  +++ C   +GG
Sbjct:    8 LEEIQEGQIESNYDETVDSFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGG 130          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_PICST1.198e-1236.36ATP-dependent RNA helicase DBP2 OS=Pichia stipitis... [more]
SPB4_ENCCU1.565e-1243.30ATP-dependent rRNA helicase SPB4 OS=Encephalitozoo... [more]
RH52A_ORYSJ1.565e-1238.21DEAD-box ATP-dependent RNA helicase 52A OS=Oryza s... [more]
RH51_ARATH1.565e-1240.18DEAD-box ATP-dependent RNA helicase 51 OS=Arabidop... [more]
PRP5_MAGGR1.565e-1238.10Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP5_CANGA1.565e-1240.66Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP28_COCIM1.565e-1236.28Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
MAK5_SCHPO1.565e-1235.40ATP-dependent RNA helicase mak5 OS=Schizosaccharom... [more]
IF4A_SCLS11.565e-1230.08ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]
IF4A_BOTFB1.565e-1230.08ATP-dependent RNA helicase eIF4A OS=Botryotinia fu... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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