FC876447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Pichia stipitis GN=DBP2 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12 Identity = 40/110 (36.36%), Postives = 57/110 (51.82%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 TF G E+ + K G PT +Q P L G+D++G+A TGSGKT ++ LP + + P G + LV+ PTRELA Q+ ++ GS +R V GG Sbjct: 98 TFDEAGFPEYVLNEVKAQGFPSPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPAIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGG 207
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: SPB4_ENCCU (ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon cuniculi GN=SPB4 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 3 Query: 336 KELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP----YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 +E G + T VQ CIP++L+GKDV+ + TG+GKT AF PIL + + GV A+VITPTRELA Q+ E + ++CE +GGM + Sbjct: 20 EENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVTAVVITPTRELALQIRE----VAGLFDVKCECFIGGMSI 112
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 47/123 (38.21%), Postives = 60/123 (48.78%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-------------------HRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 F GL E ++ G PTPVQ + +P L G+D++ AQTGSGKTAAF LP++ +R A P ALV+ PTRELA Q+ E+ K LR V GG Sbjct: 86 FEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKP---RALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGG 205
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH51_ARATH (DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis thaliana GN=RH51 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 3 Query: 282 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 + VTF L L+E KE+G + T +Q I +LEGKDVLG A+TGSGKT AF +P + L ++ + G +VI PTRELA Q + L +V+GG Sbjct: 87 TNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGG 198
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: PRP5_MAGGR (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Magnaporthe grisea GN=PRP5 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 3 Query: 306 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL-----AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 GL + +L +PT +Q +P I+ G+DV+G+A+TGSGKT AF LP+ + +D G + L++TPTRELA Q+ K L LR GG Sbjct: 384 GLTRPILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNEGPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGG 488
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: PRP5_CANGA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida glabrata GN=PRP5 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 37/91 (40.66%), Postives = 56/91 (61.54%), Query Frame = 3 Query: 360 TPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILH------RLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 TP+QT IP I+ G+DV+G+++TGSGKT ++ LP++ +L G +A++ PTRELA Q+ E+ + L S L + GG DL Sbjct: 276 TPIQTQTIPAIMSGRDVIGISKTGSGKTISYLLPMIRHVKAQKKLRNGETGPIAVIFAPTRELAVQINEEVQKLISDLDISSICCTGGSDL 366
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: PRP28_COCIM (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides immitis GN=PRP28 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 3 Query: 306 GLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----------GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 GL + ++ ++G + P+P+Q IP L+ +D++G+A TGSGKTAAF LP+L +AE P G A+++ PTRELA Q+ + + + L +VGG L Sbjct: 383 GLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSL 495
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: MAK5_SCHPO (ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces pombe GN=mak5 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 3 Query: 300 GLGLAEWA--------VQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE--DPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 608 G+ ++ WA + + + G +P P+Q+ IP+ G D++G A TGSGKT AF +PIL D V ALV+ PTRELA+Q+ + F+ + ++R + GG+ Sbjct: 118 GVDVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGL 230
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 37/123 (30.08%), Postives = 66/123 (53.66%), Query Frame = 3 Query: 237 LEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 LE+ S ++ +F + L ++ G RP+ +Q I +++G DV+ AQ+G+GKTA F++ +L +L + AL++ PTRELA Q+ + A+G +++ C +GG Sbjct: 8 LEEIQEGQIESNYDETVDSFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGG 130
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 37/123 (30.08%), Postives = 66/123 (53.66%), Query Frame = 3 Query: 237 LEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 LE+ S ++ +F + L ++ G RP+ +Q I +++G DV+ AQ+G+GKTA F++ +L +L + AL++ PTRELA Q+ + A+G +++ C +GG Sbjct: 8 LEEIQEGQIESNYDETVDSFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGG 130 The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bpback to top |