FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  303 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            + L+E  ++     G  +P+ +Q   I   ++G DV+  AQ+G+GKTA FA+ IL ++  D     ALV+ PTRELA Q+ +   ALG  +   C   +GG ++
Sbjct:   37 MNLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV 140          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: H669_METJA (Probable ATP-dependent RNA helicase MJ0669 OS=Methanocaldococcus jannaschii GN=MJ0669 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 37/107 (34.58%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGK-DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            + F  L L++  +   +  G  +PT +Q   IP  L  + +++  A+TGSGKTA+FA+P++  L  +  G+ A+++TPTRELA Q+A++ ++L    +L+   + GG
Sbjct:    6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE-LVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGG 111          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 39/118 (33.05%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  267 STTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +T+ + TV  TF  + L E  ++     G   P+ VQ+  I ++ +G+D +  AQ+G+GKTA F++ +L  +        ALV++PTRELA Q+     ALG  ++++C   +GG ++
Sbjct:   18 TTSKEVTVHPTFESMALKESLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNV 135          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: FAL1_ASPOR (ATP-dependent RNA helicase fal1 OS=Aspergillus oryzae GN=fal1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  267 STTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +T+ + TV  TF  + L E  ++     G   P+ VQ+  I +I +G+D +  AQ+G+GKTA F++ IL  +        ALV++PTRELA Q+     ALG  ++++C   +GG ++
Sbjct:   15 NTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNI 132          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: FAL1_ASPNC (ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fal1 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  267 STTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +T+ + TV  TF  + L E  ++     G   P+ VQ+  I +I +G+D +  AQ+G+GKTA F++ IL  +        ALV++PTRELA Q+     ALG  ++++C   +GG ++
Sbjct:   16 NTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNI 133          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX52_HUMAN (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  324 VQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP-YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVV 596
            +Q   + G + PTP+Q   IP +L G+++L  A TGSGKT AF++PIL +L +    G  AL+I+PTRELA Q+  +   +  G   R  ++
Sbjct:  177 LQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMI 268          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX4_PIG (Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa GN=DDX4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3
Query:  288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA-----------LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +TF    L +       + G  + TPVQ + IP IL G+D++  AQTGSGKTAAF LPIL  +  D  G+ A           +++ PTREL  Q+  + +    G  +R  V+ GG  L
Sbjct:  286 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD--GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQL 403          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX4_MACFA (Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis GN=DDX4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3
Query:  288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA-----------LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +TF    L +       + G  + TPVQ + IP IL G+D++  AQTGSGKTAAF LPIL  +  D  G+ A           +++ PTREL  Q+  + +    G  +R  V+ GG  L
Sbjct:  289 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD--GITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQL 406          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3
Query:  288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA-----------LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +TF    L +       + G  + TPVQ + IP IL G+D++  AQTGSGKTAAF LPIL  +  D  G+ A           +++ PTREL  Q+  + +    G  +R  V+ GG  L
Sbjct:  288 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD--GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQL 405          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX3Y_PANTR (ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 44/105 (41.90%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  354 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYG------------------VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            RPTPVQ H IP I   +D++  AQTGSGKTAAF LPIL ++  D  G                   ++LV+ PTRELA Q+ E+ +       +R  VV GG D+
Sbjct:  200 RPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADI 304          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A1_PONAB2.669e-1235.58Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]
H669_METJA2.669e-1234.58Probable ATP-dependent RNA helicase MJ0669 OS=Meth... [more]
FAL1_MAGGR2.669e-1233.05ATP-dependent RNA helicase FAL1 OS=Magnaporthe gri... [more]
FAL1_ASPOR2.669e-1234.75ATP-dependent RNA helicase fal1 OS=Aspergillus ory... [more]
FAL1_ASPNC2.669e-1234.75ATP-dependent RNA helicase fal1 OS=Aspergillus nig... [more]
DDX52_HUMAN2.669e-1240.22Probable ATP-dependent RNA helicase DDX52 OS=Homo ... [more]
DDX4_PIG2.669e-1236.67Probable ATP-dependent RNA helicase DDX4 OS=Sus sc... [more]
DDX4_MACFA2.669e-1236.67Probable ATP-dependent RNA helicase DDX4 OS=Macaca... [more]
DDX4_HUMAN2.669e-1236.67Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
DDX3Y_PANTR2.669e-1241.90ATP-dependent RNA helicase DDX3Y OS=Pan troglodyte... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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