FC876447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12 Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 3 Query: 303 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 + L+E ++ G +P+ +Q I ++G DV+ AQ+G+GKTA FA+ IL ++ D ALV+ PTRELA Q+ + ALG + C +GG ++ Sbjct: 37 MNLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV 140
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: H669_METJA (Probable ATP-dependent RNA helicase MJ0669 OS=Methanocaldococcus jannaschii GN=MJ0669 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12 Identity = 37/107 (34.58%), Postives = 66/107 (61.68%), Query Frame = 3 Query: 288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGK-DVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 + F L L++ + + G +PT +Q IP L + +++ A+TGSGKTA+FA+P++ L + G+ A+++TPTRELA Q+A++ ++L +L+ + GG Sbjct: 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE-LVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGG 111
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12 Identity = 39/118 (33.05%), Postives = 68/118 (57.63%), Query Frame = 3 Query: 267 STTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 +T+ + TV TF + L E ++ G P+ VQ+ I ++ +G+D + AQ+G+GKTA F++ +L + ALV++PTRELA Q+ ALG ++++C +GG ++ Sbjct: 18 TTSKEVTVHPTFESMALKESLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNV 135
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: FAL1_ASPOR (ATP-dependent RNA helicase fal1 OS=Aspergillus oryzae GN=fal1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12 Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 3 Query: 267 STTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 +T+ + TV TF + L E ++ G P+ VQ+ I +I +G+D + AQ+G+GKTA F++ IL + ALV++PTRELA Q+ ALG ++++C +GG ++ Sbjct: 15 NTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNI 132
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: FAL1_ASPNC (ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fal1 PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12 Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 3 Query: 267 STTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 +T+ + TV TF + L E ++ G P+ VQ+ I +I +G+D + AQ+G+GKTA F++ IL + ALV++PTRELA Q+ ALG ++++C +GG ++ Sbjct: 16 NTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNI 133
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX52_HUMAN (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12 Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 324 VQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDP-YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVV 596 +Q + G + PTP+Q IP +L G+++L A TGSGKT AF++PIL +L + G AL+I+PTRELA Q+ + + G R ++ Sbjct: 177 LQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMI 268
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX4_PIG (Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa GN=DDX4 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12 Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3 Query: 288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA-----------LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 +TF L + + G + TPVQ + IP IL G+D++ AQTGSGKTAAF LPIL + D G+ A +++ PTREL Q+ + + G +R V+ GG L Sbjct: 286 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD--GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQL 403
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX4_MACFA (Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis GN=DDX4 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12 Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3 Query: 288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA-----------LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 +TF L + + G + TPVQ + IP IL G+D++ AQTGSGKTAAF LPIL + D G+ A +++ PTREL Q+ + + G +R V+ GG L Sbjct: 289 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD--GITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQL 406
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12 Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3 Query: 288 VTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA-----------LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 +TF L + + G + TPVQ + IP IL G+D++ AQTGSGKTAAF LPIL + D G+ A +++ PTREL Q+ + + G +R V+ GG L Sbjct: 288 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD--GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQL 405
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX3Y_PANTR (ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12 Identity = 44/105 (41.90%), Postives = 57/105 (54.29%), Query Frame = 3 Query: 354 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYG------------------VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 RPTPVQ H IP I +D++ AQTGSGKTAAF LPIL ++ D G ++LV+ PTRELA Q+ E+ + +R VV GG D+ Sbjct: 200 RPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADI 304 The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bpback to top |