FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP3_YARLI (ATP-dependent RNA helicase DBP3 OS=Yarrowia lipolytica GN=DBP3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  354 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 608
            RPTP+Q    P +L GKD++G+A+TGSGKT  FA+P L  +       GV  LV++PTRELA Q+ +  K L   + L    V GG+
Sbjct:  146 RPTPIQAVSWPYLLAGKDMVGVAETGSGKTFTFAVPALEHVLSTSGGKGVRVLVVSPTRELAMQIYDNIKELCDVVGLHAVCVYGGV 232          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP3_LODEL (ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus GN=DBP3 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 3
Query:  354 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA-LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 608
            +PTP+Q+   P +L+GKDV+G+A+TGSGKT AF +P ++ +       L+ L I+PTRELA Q+ +  + L  G  + C  + GG+
Sbjct:  148 KPTPIQSVSWPFLLDGKDVVGVAETGSGKTFAFGVPAINNIITSKNKDLSVLCISPTRELALQIYDNLEDLTRGTDVSCVAIYGGV 233          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP2_PICGU (ATP-dependent RNA helicase DBP2 OS=Pichia guilliermondii GN=DBP2 PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 36/110 (32.73%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            +F   G  ++ +   K+ G  +PT +Q    P  L G+D++G+A TGSGKT ++ LP +  +   P      G + LV+ PTRELA Q+ ++    G+   +R   + GG
Sbjct:  126 SFDEAGFPDYVLNEVKQQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQQECSKFGASSRIRNTCIYGG 235          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: YFML_BACSU (Putative ATP-dependent RNA helicase yfmL OS=Bacillus subtilis GN=yfmL PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 33/90 (36.67%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  345 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            G ++PTPVQ      I++GKDV+  + TG+GKT A+ALP+L R+  +     A+++ P+REL  Q+ +  +   +G  LR   ++GG ++
Sbjct:   23 GFQKPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAGSELRAASLIGGANV 112          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYG-----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            TFA + L +   +  +     +PTPVQ + IP  + G+D++  AQTGSGKTAAF  PI+      R  + P G      LAL+++PTREL+ Q+ E+ +       +R  V  GG
Sbjct:  175 TFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGG 289          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  345 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            G  RP+ +Q   I  I+ G+D +  AQ+G+GKTA F++ IL R+        ALV+ PTRELA Q+ +   ALG  L++ C   VGG
Sbjct:   47 GFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCHACVGG 133          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: HAS1_MAGGR (ATP-dependent RNA helicase HAS1 OS=Magnaporthe grisea GN=HAS1 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  270 TTTDSTV-TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            TT +S    F+ L L+E  ++  +E+G  + T +Q   IP +L GKDVLG A+TGSGKT AF +P +  L    +    G   +V++PTRELA Q+    + L         +V+GG
Sbjct:  105 TTAESEAQAFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEMLRSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYGIVIGG 221          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            TF  L L E  ++        +P+ +Q   I  I+ G+DV+  AQ+G+GKTA F++ +L  +  +     ALV++PTRELA Q+     ALG  +++ C   +GG
Sbjct:   24 TFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNVSCHACIGG 128          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: FAL1_AJECN (ATP-dependent RNA helicase FAL1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  267 STTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +T+ + TV  TF  + L E  ++     G   P+ VQ+  I +I +G+D +  AQ+G+GKTA F++ IL  +        ALV++PTRELA Q+     ALG  ++++C   +GG ++
Sbjct:   16 TTSKEVTVAPTFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNV 133          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP4_ASPOR (ATP-dependent RNA helicase dbp4 OS=Aspergillus oryzae GN=dbp4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 3
Query:  216 KNAKTAQ-LEKFTNPDPNSTTT---------DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            KNAK++  L++    D  ST T         ++  +F+ L L+E           +  T +Q+  I   L+G+D+LG A+TGSGKT AF +P+L  L    +    G+ AL+++PTRELA Q+ E  + +G        +++GG  L
Sbjct:   11 KNAKSSHTLKRKRAQDDLSTLTQRVEDLDIKETYKSFSDLPLSEPTASGLASSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWSEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSL 157          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP3_YARLI3.485e-1244.83ATP-dependent RNA helicase DBP3 OS=Yarrowia lipoly... [more]
DBP3_LODEL3.485e-1241.86ATP-dependent RNA helicase DBP3 OS=Lodderomyces el... [more]
DBP2_PICGU3.485e-1232.73ATP-dependent RNA helicase DBP2 OS=Pichia guillier... [more]
YFML_BACSU4.552e-1236.67Putative ATP-dependent RNA helicase yfmL OS=Bacill... [more]
RH37_ORYSJ4.552e-1237.39DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sa... [more]
IF4A_CRYNE4.552e-1242.53ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
HAS1_MAGGR4.552e-1237.61ATP-dependent RNA helicase HAS1 OS=Magnaporthe gri... [more]
FAL1_CRYNE4.552e-1235.24ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne... [more]
FAL1_AJECN4.552e-1234.75ATP-dependent RNA helicase FAL1 OS=Ajellomyces cap... [more]
DBP4_ASPOR4.552e-1232.65ATP-dependent RNA helicase dbp4 OS=Aspergillus ory... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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