FC876447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP3_YARLI (ATP-dependent RNA helicase DBP3 OS=Yarrowia lipolytica GN=DBP3 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12 Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 3 Query: 354 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 608 RPTP+Q P +L GKD++G+A+TGSGKT FA+P L + GV LV++PTRELA Q+ + K L + L V GG+ Sbjct: 146 RPTPIQAVSWPYLLAGKDMVGVAETGSGKTFTFAVPALEHVLSTSGGKGVRVLVVSPTRELAMQIYDNIKELCDVVGLHAVCVYGGV 232
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP3_LODEL (ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus GN=DBP3 PE=3 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12 Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 3 Query: 354 RPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA-LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 608 +PTP+Q+ P +L+GKDV+G+A+TGSGKT AF +P ++ + L+ L I+PTRELA Q+ + + L G + C + GG+ Sbjct: 148 KPTPIQSVSWPFLLDGKDVVGVAETGSGKTFAFGVPAINNIITSKNKDLSVLCISPTRELALQIYDNLEDLTRGTDVSCVAIYGGV 233
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP2_PICGU (ATP-dependent RNA helicase DBP2 OS=Pichia guilliermondii GN=DBP2 PE=3 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12 Identity = 36/110 (32.73%), Postives = 59/110 (53.64%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 +F G ++ + K+ G +PT +Q P L G+D++G+A TGSGKT ++ LP + + P G + LV+ PTRELA Q+ ++ G+ +R + GG Sbjct: 126 SFDEAGFPDYVLNEVKQQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQQECSKFGASSRIRNTCIYGG 235
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: YFML_BACSU (Putative ATP-dependent RNA helicase yfmL OS=Bacillus subtilis GN=yfmL PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12 Identity = 33/90 (36.67%), Postives = 56/90 (62.22%), Query Frame = 3 Query: 345 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 G ++PTPVQ I++GKDV+ + TG+GKT A+ALP+L R+ + A+++ P+REL Q+ + + +G LR ++GG ++ Sbjct: 23 GFQKPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAGSELRAASLIGGANV 112
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12 Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPIL-----HRLAEDPYG-----VLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 TFA + L + + + +PTPVQ + IP + G+D++ AQTGSGKTAAF PI+ R + P G LAL+++PTREL+ Q+ E+ + +R V GG Sbjct: 175 TFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGG 289
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12 Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 3 Query: 345 GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 G RP+ +Q I I+ G+D + AQ+G+GKTA F++ IL R+ ALV+ PTRELA Q+ + ALG L++ C VGG Sbjct: 47 GFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCHACVGG 133
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: HAS1_MAGGR (ATP-dependent RNA helicase HAS1 OS=Magnaporthe grisea GN=HAS1 PE=3 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12 Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 3 Query: 270 TTTDSTV-TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 TT +S F+ L L+E ++ +E+G + T +Q IP +L GKDVLG A+TGSGKT AF +P + L + G +V++PTRELA Q+ + L +V+GG Sbjct: 105 TTAESEAQAFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEMLRSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYGIVIGG 221
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12 Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 TF L L E ++ +P+ +Q I I+ G+DV+ AQ+G+GKTA F++ +L + + ALV++PTRELA Q+ ALG +++ C +GG Sbjct: 24 TFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNVSCHACIGG 128
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: FAL1_AJECN (ATP-dependent RNA helicase FAL1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=FAL1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12 Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 3 Query: 267 STTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 +T+ + TV TF + L E ++ G P+ VQ+ I +I +G+D + AQ+G+GKTA F++ IL + ALV++PTRELA Q+ ALG ++++C +GG ++ Sbjct: 16 TTSKEVTVAPTFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNV 133
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP4_ASPOR (ATP-dependent RNA helicase dbp4 OS=Aspergillus oryzae GN=dbp4 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12 Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 3 Query: 216 KNAKTAQ-LEKFTNPDPNSTTT---------DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 KNAK++ L++ D ST T ++ +F+ L L+E + T +Q+ I L+G+D+LG A+TGSGKT AF +P+L L + G+ AL+++PTRELA Q+ E + +G +++GG L Sbjct: 11 KNAKSSHTLKRKRAQDDLSTLTQRVEDLDIKETYKSFSDLPLSEPTASGLASSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWSEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSL 157 The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bpback to top |