FC876447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_PICGU (ATP-dependent RNA helicase DBP10 OS=Pichia guilliermondii GN=DBP10 PE=3 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19 Identity = 47/133 (35.34%), Postives = 83/133 (62.41%), Query Frame = 3 Query: 222 AKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 ++ +++ ++ + + T +FA GL+++ ++ + G ++PTP+Q IP ++E +DV+G+A+TGSGKTAAF LP++ +L GV A++++P+RELA Q +Q K G LR V++GG L Sbjct: 77 SRPSEVAEYFSNNKLQATKAKAGSFASFGLSKFLLKNIAKKGFKQPTPIQRKTIPLVMESRDVVGMARTGSGKTAAFVLPVVEKLKSHSPKVGVRAVILSPSRELALQTFKQVKEFTKGTDLRSIVLIGGDSL 209
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19 Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 548 TFA LGL ++ +LG +P+P+Q CIP +L G+DVLG+AQTGSGKTAAF+LP+L L + LV+ PTRELA Q+AE Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE 92
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3) HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19 Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 548 TFA LGL ++ +LG +P+P+Q CIP +L+G+DVLG+AQTGSGKTAAF+LP+L+ + + LV+ PTRELA Q+AE Sbjct: 7 TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPELRAPQILVLAPTRELAVQVAE 92
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19 Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 548 TFA LGL ++ +LG +P+P+Q CIP +L G+DVLG+AQTGSGKTAAF+LP+L L + LV+ PTRELA Q+AE Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE 92
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19 Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 548 TFA LGL ++ +LG +P+P+Q CIP +L G+DVLG+AQTGSGKTAAF+LP+L L + LV+ PTRELA Q+AE Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE 92
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3) HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19 Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 548 TFA LGL ++ +LG +P+P+Q CIP +L G+DVLG+AQTGSGKTAAF+LP+L L + LV+ PTRELA Q+AE Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE 92
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_LODEL (ATP-dependent RNA helicase DBP10 OS=Lodderomyces elongisporus GN=DBP10 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19 Identity = 45/109 (41.28%), Postives = 73/109 (66.97%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL-AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 +FA G +++ + + G ++PTP+Q IP I++ +DV+G+A+TGSGKTAAF LP++ +L P GV A++++P+RELA Q +Q K G +L+ V++GG L Sbjct: 122 SFASFGFSKFLLANIAKKGYKQPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAFVLPLIEKLKLRSPSGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSL 230
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_CANGA (ATP-dependent RNA helicase DBP10 OS=Candida glabrata GN=DBP10 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18 Identity = 46/110 (41.82%), Postives = 69/110 (62.73%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 +FA GL++ + + G R+PTP+Q IP IL+ +D++G+A+TGSGKTAAF LP++ +L G A++++P+RELA Q FK G HLR ++ GG L Sbjct: 116 SFASFGLSKLILVNISKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHSVFKEFSRGTHLRSVLLTGGDSL 225
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y2316_STAA8 (Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02316 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F LG+++ VQ+ + +G + PTP+Q IP L+G D+LG AQTG+GKT AF +P++ ++ GV +L++ PTRELA Q+AEQ + G ++ V GGM + Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y2168_STAAR (Probable DEAD-box ATP-dependent RNA helicase SAR2168 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18 Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F LG+++ VQ+ + +G + PTP+Q IP L+G D+LG AQTG+GKT AF +P++ ++ GV +L++ PTRELA Q+AEQ + G ++ V GGM + Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109 The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bpback to top |