FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_PICGU (ATP-dependent RNA helicase DBP10 OS=Pichia guilliermondii GN=DBP10 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 47/133 (35.34%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  222 AKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            ++ +++ ++ + +    T     +FA  GL+++ ++   + G ++PTP+Q   IP ++E +DV+G+A+TGSGKTAAF LP++ +L       GV A++++P+RELA Q  +Q K    G  LR  V++GG  L
Sbjct:   77 SRPSEVAEYFSNNKLQATKAKAGSFASFGLSKFLLKNIAKKGFKQPTPIQRKTIPLVMESRDVVGMARTGSGKTAAFVLPVVEKLKSHSPKVGVRAVILSPSRELALQTFKQVKEFTKGTDLRSIVLIGGDSL 209          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 548
            TFA LGL    ++   +LG  +P+P+Q  CIP +L G+DVLG+AQTGSGKTAAF+LP+L  L  +      LV+ PTRELA Q+AE
Sbjct:    7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE 92          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 548
            TFA LGL    ++   +LG  +P+P+Q  CIP +L+G+DVLG+AQTGSGKTAAF+LP+L+ +  +      LV+ PTRELA Q+AE
Sbjct:    7 TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPELRAPQILVLAPTRELAVQVAE 92          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 548
            TFA LGL    ++   +LG  +P+P+Q  CIP +L G+DVLG+AQTGSGKTAAF+LP+L  L  +      LV+ PTRELA Q+AE
Sbjct:    7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE 92          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 548
            TFA LGL    ++   +LG  +P+P+Q  CIP +L G+DVLG+AQTGSGKTAAF+LP+L  L  +      LV+ PTRELA Q+AE
Sbjct:    7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE 92          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAE 548
            TFA LGL    ++   +LG  +P+P+Q  CIP +L G+DVLG+AQTGSGKTAAF+LP+L  L  +      LV+ PTRELA Q+AE
Sbjct:    7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE 92          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_LODEL (ATP-dependent RNA helicase DBP10 OS=Lodderomyces elongisporus GN=DBP10 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 45/109 (41.28%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL-AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +FA  G +++ +    + G ++PTP+Q   IP I++ +DV+G+A+TGSGKTAAF LP++ +L    P GV A++++P+RELA Q  +Q K    G +L+  V++GG  L
Sbjct:  122 SFASFGFSKFLLANIAKKGYKQPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAFVLPLIEKLKLRSPSGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSL 230          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_CANGA (ATP-dependent RNA helicase DBP10 OS=Candida glabrata GN=DBP10 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 46/110 (41.82%), Postives = 69/110 (62.73%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +FA  GL++  +    + G R+PTP+Q   IP IL+ +D++G+A+TGSGKTAAF LP++ +L       G  A++++P+RELA Q    FK    G HLR  ++ GG  L
Sbjct:  116 SFASFGLSKLILVNISKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHSVFKEFSRGTHLRSVLLTGGDSL 225          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y2316_STAA8 (Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02316 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     GV +L++ PTRELA Q+AEQ +    G  ++   V GGM +
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y2168_STAAR (Probable DEAD-box ATP-dependent RNA helicase SAR2168 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  LG+++  VQ+ + +G + PTP+Q   IP  L+G D+LG AQTG+GKT AF +P++ ++     GV +L++ PTRELA Q+AEQ +    G  ++   V GGM +
Sbjct:    4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPI 109          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP10_PICGU3.845e-1935.34ATP-dependent RNA helicase DBP10 OS=Pichia guillie... [more]
DEAD_SHIFL5.021e-1953.49Cold-shock DEAD box protein A OS=Shigella flexneri... [more]
DEAD_KLEPN5.021e-1952.33Cold-shock DEAD box protein A OS=Klebsiella pneumo... [more]
DEAD_ECOLI5.021e-1953.49Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECOL65.021e-1953.49Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECO575.021e-1953.49Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DBP10_LODEL6.558e-1941.28ATP-dependent RNA helicase DBP10 OS=Lodderomyces e... [more]
DBP10_CANGA1.119e-1841.82ATP-dependent RNA helicase DBP10 OS=Candida glabra... [more]
Y2316_STAA81.461e-1842.06Probable DEAD-box ATP-dependent RNA helicase SAOUH... [more]
Y2168_STAAR1.461e-1842.06Probable DEAD-box ATP-dependent RNA helicase SAR21... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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