FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP7 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 7424) GN=dapF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.025e-35
Identity = 64/88 (72.73%), Postives = 77/88 (87.50%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELE 589
            + F KYHGLGNDFIL+DNR+ +EP ++PE A ++CDR+FGIGADGVIF +PG + TDY MRIFNSDGSEPEMCGNG+RC A+FIAELE
Sbjct:    3 IEFTKYHGLGNDFILIDNRHGSEPMVSPEMAVEMCDRHFGIGADGVIFVLPGTSQTDYQMRIFNSDGSEPEMCGNGIRCLAQFIAELE 90          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP4 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dapF PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.801e-35
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELEN--LNGKQSFTVHT 625
            L F KY GLGNDFIL+DNRN   P +TPEQA  +CDR+FG+GADGVIF +P    TDYTMRIFNSDGSEPEMCGNG+RC ARF A+LE   L     + +HT
Sbjct:    3 LQFTKYQGLGNDFILIDNRNEATPLLTPEQAVDICDRHFGVGADGVIFLLPATGETDYTMRIFNSDGSEPEMCGNGIRCLARFAADLEGHALTATPRYRIHT 104          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_MICAN (Diaminopimelate epimerase OS=Microcystis aeruginosa (strain NIES-843) GN=dapF PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.961e-34
Identity = 69/99 (69.70%), Postives = 80/99 (80.81%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHT 625
            F KY GLGNDFIL+DNR+S EP IT E A  +CDR+FGIGADGVIFA+PG   TDYTMRIFNSDGSEPEMCGNG+RC A+FIA LE  N   +++ +HT
Sbjct:    5 FTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQAETDYTMRIFNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHT 103          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP8 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 8801) GN=dapF PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.961e-34
Identity = 65/88 (73.86%), Postives = 75/88 (85.23%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELE 589
            + F KY GLGNDFIL+DNR+S  P ++PEQA K+CDR+FGIGADGVIF +PG   TDYTMRIFNSDGSEP+MCGNG+RC ARFIA LE
Sbjct:    3 IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGTANTDYTMRIFNSDGSEPQMCGNGIRCLARFIAHLE 90          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACAM1 (Diaminopimelate epimerase OS=Acaryochloris marina (strain MBIC 11017) GN=dapF PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.704e-34
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELEN--LNGKQSFTVHT 625
            + F KY GLGNDFIL+DNR+  +P +TP+QA ++CDRNFGIG DGVIFA+P    TDYTMRI+NSDGSEPEMCGNG+RC ARF+A LE   L    ++ +HT
Sbjct:    3 VEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALPPEGDTDYTMRIYNSDGSEPEMCGNGIRCLARFLAHLEGKPLQTDITYRIHT 104          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SYNJA (Diaminopimelate epimerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dapF PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.520e-31
Identity = 60/100 (60.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F KY GLGNDFILVDNR+  +P +TPE+A  LC+R FG+GADGVIF +PG  G D++MR+FNSDGSE EMCGNG+RC ARF+ +L       ++ +HT
Sbjct:    5 LSFHKYQGLGNDFILVDNRHQPQPCLTPEEAVALCNRRFGVGADGVIFLLPGQEGADFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGQDGAYQIHT 104          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SYNJB (Diaminopimelate epimerase OS=Synechococcus sp. GN=dapF PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.930e-30
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F KY GLGNDFILVDNR  ++P ++PE+A  LC+R FG+GADGVIF +PG  G D++MR+FNSDGSE EMCGNG+RC ARF+ +L       ++ +HT
Sbjct:    5 LSFHKYQGLGNDFILVDNRWQSQPCLSPEEAVALCNRRFGVGADGVIFLLPGQEGADFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGRDGAYQIHT 104          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_THEEB (Diaminopimelate epimerase OS=Thermosynechococcus elongatus (strain BP-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.152e-26
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELE 589
            L F KY GLGNDF+L+DNR+  E  +TPEQA+  CDR+FG+GADGVIF + G   +DY MR++N+DGS  +MCGNG+RC A+FI  LE
Sbjct:    3 LSFQKYQGLGNDFLLIDNRHQEELLLTPEQAQFWCDRHFGVGADGVIFLLRGTGESDYRMRMYNADGSVAQMCGNGIRCLAKFIFALE 90          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_MOOTA (Diaminopimelate epimerase OS=Moorella thermoacetica (strain ATCC 39073) GN=dapF PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.318e-22
Identity = 50/94 (53.19%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ 607
            +HFVK HGLGNDF+LV+      P   P  A ++C R FGIGADG+I  +P        MRIFN DGSEPEMCGNG+RCFAR++ E     G++
Sbjct:    1 MHFVKMHGLGNDFVLVNAMTEKVPGDLPGLARRVCHRRFGIGADGLILVLPSEQAR-LRMRIFNPDGSEPEMCGNGIRCFARYVYETGLAEGEE 93          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PROMM (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain MIT 9313) GN=dapF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.936e-22
Identity = 53/104 (50.96%), Postives = 69/104 (66.35%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNS--TEPRITPEQA--EKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F KY GLGNDF+L+D R    T+  I P+ A   K+CDR+FGIGADG+I A+P     D  M+IFN+DGS  EMCGNG+RC  RF+A++E     Q + + T
Sbjct:    5 LQFSKYQGLGNDFLLIDGREDQLTQQVINPDPAWVRKICDRHFGIGADGLILALPPRADGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIEGDLCVQRWNIET 108          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_CYAP73.025e-3572.73Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]
DAPF_CYAP48.801e-3565.69Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]
DAPF_MICAN1.961e-3469.70Diaminopimelate epimerase OS=Microcystis aeruginos... [more]
DAPF_CYAP81.961e-3473.86Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]
DAPF_ACAM15.704e-3463.73Diaminopimelate epimerase OS=Acaryochloris marina ... [more]
DAPF_SYNJA4.520e-3160.00Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_SYNJB2.930e-3059.00Diaminopimelate epimerase OS=Synechococcus sp. GN=... [more]
DAPF_THEEB1.152e-2660.23Diaminopimelate epimerase OS=Thermosynechococcus e... [more]
DAPF_MOOTA1.318e-2253.19Diaminopimelate epimerase OS=Moorella thermoacetic... [more]
DAPF_PROMM2.936e-2250.96Diaminopimelate epimerase OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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