FC876448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSYIN (Diaminopimelate epimerase OS=Psychromonas ingrahamii (strain 37) GN=dapF PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16 Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF+++DN ++ + +L DRNFGIG D ++ P + D+ RIFN+DGSE E CGNG RCFARF+ +++ L K+ V T Sbjct: 3 IQFSKMHGLGNDFMVIDNVTQNV-FLSKDTISRLADRNFGIGFDQLLMIEPPYDPELDFHYRIFNADGSEVEQCGNGARCFARFV-KMKGLTQKRIINVST 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEE4 (Diaminopimelate epimerase OS=Pseudomonas entomophila (strain L48) GN=dapF PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16 Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S I P+ A++ DRN GIG D ++ P D+ RIFN+DGSE E CGNG RCFARF+ + + L K+ V T Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METM7 (Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=dapF PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16 Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAEK-LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGND+I VD +T +I P + + + DR+FGIG+DG++ +P D+ MR+FNSDGSE EMCGN +RC +F+ + + + K + T+ T Sbjct: 1 MKFTKMHGLGNDYIYVD---ATSQKIENPNEISRFVSDRHFGIGSDGLVLILPS-EIADFKMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIET 97
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METJA (Diaminopimelate epimerase OS=Methanocaldococcus jannaschii GN=dapF PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16 Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAE---KLCDRNFGIGADGVIFAM-PGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 + F K H LGND+I+++ + + + E+AE K+C R F +GADGVIF P + D RIFNSDGSE EMCGNG+RCF++++ E Sbjct: 1 MEFTKMHALGNDYIVINEFDGEKVK-EEEKAEFSRKICRRGFSVGADGVIFIQKPTSDEYDVRFRIFNSDGSEAEMCGNGIRCFSKYVYE 89
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RALSO (Diaminopimelate epimerase OS=Ralstonia solanacearum GN=dapF PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16 Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619 LHF K HG GNDF+++D +T TPEQ + DR+FG+GAD ++ D+ RIFN DG E E CGNG RCF +F+ + L K++ V Sbjct: 3 LHFTKMHGAGNDFVVLDGI-ATPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNHDGGEVEQCGNGARCFVKFVTD-RGLTDKRTIRV 99
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEU2 (Diaminopimelate epimerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dapF PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16 Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S I P+ A++ DR+ GIG D ++ P D+ RIFNSDGSE E CGNG RCFARF+ + + L K+ V T Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSESM (Diaminopimelate epimerase OS=Pseudomonas syringae pv. tomato GN=dapF PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16 Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S I P+ A++ DR+ GIG D ++ P D+ RIFNSDGSE E CGNG RCFARF+ + + L K+ V T Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSE14 (Diaminopimelate epimerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dapF PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16 Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S I P+ A++ DR+ GIG D ++ P D+ RIFNSDGSE E CGNG RCFARF+ + + L K+ V T Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METMP (Diaminopimelate epimerase OS=Methanococcus maripaludis GN=dapF PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16 Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEK-LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGND+I VD ++ P + K + DR+FGIG+DG++ +P + D+ MR+FNSDGSE EMCGN +RC +F+ + + + K + T+ T Sbjct: 1 MKFTKMHGLGNDYIYVDA--ISQKIENPNEISKFVSDRHFGIGSDGLVLILPS-DVADFKMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIET 97
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CHRSD (Diaminopimelate epimerase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dapF PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16 Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 LHF K HGLGNDF+++D + R+ E+ +L DR+ GIG D ++ P + D+ RIFN+DG+E E CGNG RCFARF+ + L K+ V T Sbjct: 3 LHFTKMHGLGNDFVVID-LITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDFRYRIFNADGNEVENCGNGARCFARFVRD-NRLTHKREIRVET 101 The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bpback to top |