FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSYIN (Diaminopimelate epimerase OS=Psychromonas ingrahamii (strain 37) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++DN       ++ +   +L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+ +++ L  K+   V T
Sbjct:    3 IQFSKMHGLGNDFMVIDNVTQNV-FLSKDTISRLADRNFGIGFDQLLMIEPPYDPELDFHYRIFNADGSEVEQCGNGARCFARFV-KMKGLTQKRIINVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEE4 (Diaminopimelate epimerase OS=Pseudomonas entomophila (strain L48) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    I P+ A++  DRN GIG D ++    P     D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+   V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METM7 (Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAEK-LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGND+I VD   +T  +I  P +  + + DR+FGIG+DG++  +P     D+ MR+FNSDGSE EMCGN +RC  +F+ + + +  K + T+ T
Sbjct:    1 MKFTKMHGLGNDYIYVD---ATSQKIENPNEISRFVSDRHFGIGSDGLVLILPS-EIADFKMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIET 97          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METJA (Diaminopimelate epimerase OS=Methanocaldococcus jannaschii GN=dapF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.844e-16
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAE---KLCDRNFGIGADGVIFAM-PGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            + F K H LGND+I+++  +  + +   E+AE   K+C R F +GADGVIF   P  +  D   RIFNSDGSE EMCGNG+RCF++++ E
Sbjct:    1 MEFTKMHALGNDYIVINEFDGEKVK-EEEKAEFSRKICRRGFSVGADGVIFIQKPTSDEYDVRFRIFNSDGSEAEMCGNGIRCFSKYVYE 89          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RALSO (Diaminopimelate epimerase OS=Ralstonia solanacearum GN=dapF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            LHF K HG GNDF+++D   +T    TPEQ   + DR+FG+GAD ++          D+  RIFN DG E E CGNG RCF +F+ +   L  K++  V
Sbjct:    3 LHFTKMHGAGNDFVVLDGI-ATPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNHDGGEVEQCGNGARCFVKFVTD-RGLTDKRTIRV 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEU2 (Diaminopimelate epimerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    I P+ A++  DR+ GIG D ++    P     D+  RIFNSDGSE E CGNG RCFARF+ + + L  K+   V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSESM (Diaminopimelate epimerase OS=Pseudomonas syringae pv. tomato GN=dapF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    I P+ A++  DR+ GIG D ++    P     D+  RIFNSDGSE E CGNG RCFARF+ + + L  K+   V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSE14 (Diaminopimelate epimerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    I P+ A++  DR+ GIG D ++    P     D+  RIFNSDGSE E CGNG RCFARF+ + + L  K+   V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METMP (Diaminopimelate epimerase OS=Methanococcus maripaludis GN=dapF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEK-LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGND+I VD    ++    P +  K + DR+FGIG+DG++  +P  +  D+ MR+FNSDGSE EMCGN +RC  +F+ + + +  K + T+ T
Sbjct:    1 MKFTKMHGLGNDYIYVDA--ISQKIENPNEISKFVSDRHFGIGSDGLVLILPS-DVADFKMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIET 97          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CHRSD (Diaminopimelate epimerase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            LHF K HGLGNDF+++D   +   R+  E+  +L DR+ GIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+ +   L  K+   V T
Sbjct:    3 LHFTKMHGLGNDFVVID-LITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDFRYRIFNADGNEVENCGNGARCFARFVRD-NRLTHKREIRVET 101          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_PSYIN1.844e-1644.55Diaminopimelate epimerase OS=Psychromonas ingraham... [more]
DAPF_PSEE41.844e-1646.53Diaminopimelate epimerase OS=Pseudomonas entomophi... [more]
DAPF_METM71.844e-1643.14Diaminopimelate epimerase OS=Methanococcus maripal... [more]
DAPF_METJA1.844e-1647.78Diaminopimelate epimerase OS=Methanocaldococcus ja... [more]
DAPF_RALSO2.408e-1643.43Diaminopimelate epimerase OS=Ralstonia solanacearu... [more]
DAPF_PSEU22.408e-1646.53Diaminopimelate epimerase OS=Pseudomonas syringae ... [more]
DAPF_PSESM2.408e-1646.53Diaminopimelate epimerase OS=Pseudomonas syringae ... [more]
DAPF_PSE142.408e-1646.53Diaminopimelate epimerase OS=Pseudomonas syringae ... [more]
DAPF_METMP2.408e-1642.57Diaminopimelate epimerase OS=Methanococcus maripal... [more]
DAPF_CHRSD2.408e-1644.55Diaminopimelate epimerase OS=Chromohalobacter sale... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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