FC876448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURP8 (Diaminopimelate epimerase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=dapF PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16 Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619 L F K HG GNDF+++D T+P +T Q L +R+FG+GAD ++ P V+G D+ RIFN DG E E CGNG RCF +F+ + L K+S V Sbjct: 3 LKFTKMHGAGNDFVVLDGY--TQPLNLTETQVRALANRHFGVGADQLLVVEKPTVDGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRD-SRLTDKRSVRV 99
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACTSZ (Diaminopimelate epimerase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=dapF PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16 Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA-EKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 +HF K HGLGNDF++VD T+ PE+ +KL DR+ GIG D ++ P + D+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T Sbjct: 1 MHFSKMHGLGNDFVVVDA--VTQNVFFPEEVIKKLADRHRGIGFDQLLLVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKKDIAVST 99
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF1_ANASP (Diaminopimelate epimerase 1 OS=Anabaena sp. (strain PCC 7120) GN=dapF1 PE=3 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16 Identity = 39/100 (39.00%), Postives = 66/100 (66.00%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F KYH LGND+++++ ++ P +TPE+ + +C RNFGIG+DG++ + +RIFN DGSE E GNG+R F+R++ ++ L ++ F++ T Sbjct: 1 MKFYKYHALGNDYLVINPQDLKFP-LTPEKIKIICHRNFGIGSDGILLGPLASTKAQFALRIFNPDGSEAEKSGNGLRIFSRYLWDM-GLVDEKPFSIET 98
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPF (Diaminopimelate epimerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dapF PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16 Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S I P+ A+ DR+ GIG D ++ P D+ RIFNSDGSE E CGNG RCFARF+ + + L K+ V T Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKMWGDRHTGIGFDQLLIVEAPSNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEMY (Diaminopimelate epimerase OS=Pseudomonas mendocina (strain ymp) GN=dapF PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16 Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S + P+ A++ DR+ G+G D ++ P + D+ RIFNSDGSE E CGNG RCFARF+ + + L K++ V T Sbjct: 3 LRFTKMHGLGNDFMVLD-LISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTTKKTIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METM6 (Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=dapF PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16 Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGND+I VD S + E + + DR+FGIG+DG++ +P + D+ MR+FNSDGSE EMCGN +RC +F+ + + + K + T+ T Sbjct: 1 MKFTKMHGLGNDYIYVD-AISQKIENPNEISRFVSDRHFGIGSDGLVLILPS-DLADFKMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIET 97
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CLOPE (Diaminopimelate epimerase OS=Clostridium perfringens GN=dapF PE=3 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16 Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 + F K HG GNDFI++++ N+ E A+K+C R FGIGADG++ N D M I NSDGS MCGNG+RCFA+++ E Sbjct: 1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVRKNEN-CDIEMVIINSDGSYAAMCGNGIRCFAKYVYE 85
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACIAD (Diaminopimelate epimerase OS=Acinetobacter sp. (strain ADP1) GN=dapF PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16 Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S + +++ DR+FGIG D ++ P D+ RIFN+DGSE E CGNGVRCFARF+ E L K V T Sbjct: 3 LEFTKMHGLGNDFVVLD-LISQRAYLDTTTIQRMADRHFGIGFDQLLIVEPPDYPNVDFKYRIFNADGSEVEQCGNGVRCFARFVHE-RQLTKKTKIKVQT 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_VIBF1 (Diaminopimelate epimerase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=dapF PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16 Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 2 Query: 329 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 HF K HGLGNDF++VD +P+ +L DR+ GIG D ++ P TD+ RIFN+DGSE E CGNG RCFARF+ ++ L K S +V T Sbjct: 4 HFSKMHGLGNDFMVVDCLTQNI-FFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV-RMKGLTNKTSISVST 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEFL (Diaminopimelate epimerase OS=Pseudomonas fluorescens GN=dapF PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16 Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S I P+ A++ DR+ GIG D ++ P D+ RIFN+DGSE E CGNG RCFARF+ + + L K+ V T Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPNNPDVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVET 101 The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bpback to top |