FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURP8 (Diaminopimelate epimerase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D    T+P  +T  Q   L +R+FG+GAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L  K+S  V
Sbjct:    3 LKFTKMHGAGNDFVVLDGY--TQPLNLTETQVRALANRHFGVGADQLLVVEKPTVDGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRD-SRLTDKRSVRV 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACTSZ (Diaminopimelate epimerase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=dapF PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA-EKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            +HF K HGLGNDF++VD    T+    PE+  +KL DR+ GIG D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MHFSKMHGLGNDFVVVDA--VTQNVFFPEEVIKKLADRHRGIGFDQLLLVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKKDIAVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF1_ANASP (Diaminopimelate epimerase 1 OS=Anabaena sp. (strain PCC 7120) GN=dapF1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 39/100 (39.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F KYH LGND+++++ ++   P +TPE+ + +C RNFGIG+DG++          + +RIFN DGSE E  GNG+R F+R++ ++  L  ++ F++ T
Sbjct:    1 MKFYKYHALGNDYLVINPQDLKFP-LTPEKIKIICHRNFGIGSDGILLGPLASTKAQFALRIFNPDGSEAEKSGNGLRIFSRYLWDM-GLVDEKPFSIET 98          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPF (Diaminopimelate epimerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    I P+ A+   DR+ GIG D ++    P     D+  RIFNSDGSE E CGNG RCFARF+ + + L  K+   V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKMWGDRHTGIGFDQLLIVEAPSNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEMY (Diaminopimelate epimerase OS=Pseudomonas mendocina (strain ymp) GN=dapF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    + P+ A++  DR+ G+G D ++   P  +   D+  RIFNSDGSE E CGNG RCFARF+ + + L  K++  V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTTKKTIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METM6 (Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=dapF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGND+I VD   S +     E +  + DR+FGIG+DG++  +P  +  D+ MR+FNSDGSE EMCGN +RC  +F+ + + +  K + T+ T
Sbjct:    1 MKFTKMHGLGNDYIYVD-AISQKIENPNEISRFVSDRHFGIGSDGLVLILPS-DLADFKMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIET 97          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CLOPE (Diaminopimelate epimerase OS=Clostridium perfringens GN=dapF PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            + F K HG GNDFI++++ N+       E A+K+C R FGIGADG++      N  D  M I NSDGS   MCGNG+RCFA+++ E
Sbjct:    1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVRKNEN-CDIEMVIINSDGSYAAMCGNGIRCFAKYVYE 85          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACIAD (Diaminopimelate epimerase OS=Acinetobacter sp. (strain ADP1) GN=dapF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    +     +++ DR+FGIG D ++   P      D+  RIFN+DGSE E CGNGVRCFARF+ E   L  K    V T
Sbjct:    3 LEFTKMHGLGNDFVVLD-LISQRAYLDTTTIQRMADRHFGIGFDQLLIVEPPDYPNVDFKYRIFNADGSEVEQCGNGVRCFARFVHE-RQLTKKTKIKVQT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_VIBF1 (Diaminopimelate epimerase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=dapF PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:  329 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            HF K HGLGNDF++VD         +P+   +L DR+ GIG D ++    P    TD+  RIFN+DGSE E CGNG RCFARF+  ++ L  K S +V T
Sbjct:    4 HFSKMHGLGNDFMVVDCLTQNI-FFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV-RMKGLTNKTSISVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEFL (Diaminopimelate epimerase OS=Pseudomonas fluorescens GN=dapF PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    I P+ A++  DR+ GIG D ++    P     D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+   V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPNNPDVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVET 101          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_BURP83.145e-1645.00Diaminopimelate epimerase OS=Burkholderia phymatum... [more]
DAPF_ACTSZ3.145e-1647.06Diaminopimelate epimerase OS=Actinobacillus succin... [more]
DAPF1_ANASP3.145e-1639.00Diaminopimelate epimerase 1 OS=Anabaena sp. (strai... [more]
DAPF_PSEPF4.107e-1646.53Diaminopimelate epimerase OS=Pseudomonas fluoresce... [more]
DAPF_PSEMY4.107e-1644.55Diaminopimelate epimerase OS=Pseudomonas mendocina... [more]
DAPF_METM64.107e-1643.00Diaminopimelate epimerase OS=Methanococcus maripal... [more]
DAPF_CLOPE4.107e-1647.67Diaminopimelate epimerase OS=Clostridium perfringe... [more]
DAPF_ACIAD4.107e-1645.54Diaminopimelate epimerase OS=Acinetobacter sp. (st... [more]
DAPF_VIBF15.364e-1647.00Diaminopimelate epimerase OS=Vibrio fischeri (stra... [more]
DAPF_PSEFL5.364e-1645.54Diaminopimelate epimerase OS=Pseudomonas fluoresce... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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