FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_GLUOX (Diaminopimelate epimerase OS=Gluconobacter oxydans GN=dapF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADG-VIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            L F K HGLGNDF+++D R + +P +       LCDR FGIG D  V+   P + G D  +R FN DGSE   CGN  RC A+F+
Sbjct:    3 LSFTKMHGLGNDFVVIDGRQN-DPALETATIRHLCDRRFGIGCDQLVLLTPPTLAGADVHVRFFNPDGSEAGACGNASRCVAKFV 86
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ERWT9 (Diaminopimelate epimerase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ GIG D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K    V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKNEIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_AZOVD (Diaminopimelate epimerase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   +    I P+ A++  DR+ GIG D ++   P      D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+   V T
Sbjct:    3 LRFTKMHGLGNDFMVID-LVTQHAHIQPKHAKQWGDRHTGIGFDQLLIVEPPSRPDVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTVKKRIRVET 101
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_AERHH (Diaminopimelate epimerase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD     +   + E  +KL DR+FGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+  L+ L  +    V T
Sbjct:    3 IDFSKMHGLGNDFMVVDGVTQ-KVFFSNEVIKKLADRHFGIGFDQLLLVEPPYDPELDFHYRIFNADGSEVEQCGNGARCFARFV-RLKGLINRDRIAVST 101
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACTPJ (Diaminopimelate epimerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++D        +T E   KL DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  KQ   V T
Sbjct:    1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKQDIHVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACTP2 (Diaminopimelate epimerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++D        +T E   KL DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  KQ   V T
Sbjct:    1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKQDIHVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_YERPY (Diaminopimelate epimerase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+  +V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKREISVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_YERPS (Diaminopimelate epimerase OS=Yersinia pseudotuberculosis GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+  +V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKREISVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_YERPP (Diaminopimelate epimerase OS=Yersinia pestis (strain Pestoides F) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+  +V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKREISVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_YERPN (Diaminopimelate epimerase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+  +V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKREISVST 99
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_GLUOX2.038e-1547.06Diaminopimelate epimerase OS=Gluconobacter oxydans... [more]
DAPF_ERWT92.038e-1544.55Diaminopimelate epimerase OS=Erwinia tasmaniensis ... [more]
DAPF_AZOVD2.038e-1544.55Diaminopimelate epimerase OS=Azotobacter vinelandi... [more]
DAPF_AERHH2.038e-1545.54Diaminopimelate epimerase OS=Aeromonas hydrophila ... [more]
DAPF_ACTPJ2.038e-1544.55Diaminopimelate epimerase OS=Actinobacillus pleuro... [more]
DAPF_ACTP22.038e-1544.55Diaminopimelate epimerase OS=Actinobacillus pleuro... [more]
DAPF_YERPY2.662e-1543.56Diaminopimelate epimerase OS=Yersinia pseudotuberc... [more]
DAPF_YERPS2.662e-1543.56Diaminopimelate epimerase OS=Yersinia pseudotuberc... [more]
DAPF_YERPP2.662e-1543.56Diaminopimelate epimerase OS=Yersinia pestis (stra... [more]
DAPF_YERPN2.662e-1543.56Diaminopimelate epimerase OS=Yersinia pestis bv. A... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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