FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_YERPG (Diaminopimelate epimerase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+  +V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKREISVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_YERPE (Diaminopimelate epimerase OS=Yersinia pestis GN=dapF PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+  +V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKREISVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_YERPB (Diaminopimelate epimerase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+  +V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKREISVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_YERPA (Diaminopimelate epimerase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+  +V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKREISVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_YERP3 (Diaminopimelate epimerase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+  +V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKREISVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_YERE8 (Diaminopimelate epimerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+  +V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDISVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_VIBPA (Diaminopimelate epimerase OS=Vibrio parahaemolyticus GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:  329 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            HF K HGLGNDF++VD         + +   +L DR+ G+G D ++    P    TD+  RIFN+DGSE E CGNG RCFARF+  L+ L  K S +V T
Sbjct:    4 HFSKMHGLGNDFMVVDCITQNV-FFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV-RLKGLTNKYSISVST 101
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PECCP (Diaminopimelate epimerase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFAKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIAVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ERWCT (Diaminopimelate epimerase OS=Erwinia carotovora subsp. atroseptica GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFAKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIAVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_DESDA (Diaminopimelate epimerase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITP--EQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K  G+GND++ +   N  + RI    E A K+ DR+FGIG+DG++  +P     D  MR+FN+DGSE EMCGN VRC  +++ +   +  K   TV T
Sbjct:    5 LRFTKMQGIGNDYVYI---NGFQERIDSPGELARKISDRHFGIGSDGLVLILPSATA-DVRMRMFNADGSESEMCGNAVRCVGKYVYD-HGIQVKDVITVET 101
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_YERPG2.662e-1543.56Diaminopimelate epimerase OS=Yersinia pestis bv. A... [more]
DAPF_YERPE2.662e-1543.56Diaminopimelate epimerase OS=Yersinia pestis GN=da... [more]
DAPF_YERPB2.662e-1543.56Diaminopimelate epimerase OS=Yersinia pseudotuberc... [more]
DAPF_YERPA2.662e-1543.56Diaminopimelate epimerase OS=Yersinia pestis bv. A... [more]
DAPF_YERP32.662e-1543.56Diaminopimelate epimerase OS=Yersinia pseudotuberc... [more]
DAPF_YERE82.662e-1543.56Diaminopimelate epimerase OS=Yersinia enterocoliti... [more]
DAPF_VIBPA2.662e-1546.00Diaminopimelate epimerase OS=Vibrio parahaemolytic... [more]
DAPF_PECCP2.662e-1543.56Diaminopimelate epimerase OS=Pectobacterium caroto... [more]
DAPF_ERWCT2.662e-1543.56Diaminopimelate epimerase OS=Erwinia carotovora su... [more]
DAPF_DESDA2.662e-1542.16Diaminopimelate epimerase OS=Desulfovibrio desulfu... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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