FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ALHEH (Diaminopimelate epimerase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNG-TDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            + F K  GLGNDF+++D  R   EP  +PEQ   + DR +G+G D V+ A P      D+   IFN DGS+ E CGNGVRC ARF+
Sbjct:    3 VRFTKMQGLGNDFVVIDAVRQPVEP--SPEQIRHIADRRYGVGCDQVLLATPARRSQADFGYLIFNPDGSQAEHCGNGVRCLARFL 86
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHIF8 (Diaminopimelate epimerase OS=Shigella flexneri serotype 5b (strain 8401) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SALTY (Diaminopimelate epimerase OS=Salmonella typhimurium GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SALTI (Diaminopimelate epimerase OS=Salmonella typhi GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SALSV (Diaminopimelate epimerase OS=Salmonella schwarzengrund (strain CVM19633) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SALPK (Diaminopimelate epimerase OS=Salmonella paratyphi A (strain AKU_12601) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SALPB (Diaminopimelate epimerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SALPA (Diaminopimelate epimerase OS=Salmonella paratyphi A GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SALNS (Diaminopimelate epimerase OS=Salmonella newport (strain SL254) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SALHS (Diaminopimelate epimerase OS=Salmonella heidelberg (strain SL476) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVST 99
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_ALHEH3.477e-1547.67Diaminopimelate epimerase OS=Alkalilimnicola ehrli... [more]
DAPF_SHIF84.541e-1543.56Diaminopimelate epimerase OS=Shigella flexneri ser... [more]
DAPF_SALTY4.541e-1543.56Diaminopimelate epimerase OS=Salmonella typhimuriu... [more]
DAPF_SALTI4.541e-1543.56Diaminopimelate epimerase OS=Salmonella typhi GN=d... [more]
DAPF_SALSV4.541e-1543.56Diaminopimelate epimerase OS=Salmonella schwarzeng... [more]
DAPF_SALPK4.541e-1543.56Diaminopimelate epimerase OS=Salmonella paratyphi ... [more]
DAPF_SALPB4.541e-1543.56Diaminopimelate epimerase OS=Salmonella paratyphi ... [more]
DAPF_SALPA4.541e-1543.56Diaminopimelate epimerase OS=Salmonella paratyphi ... [more]
DAPF_SALNS4.541e-1543.56Diaminopimelate epimerase OS=Salmonella newport (s... [more]
DAPF_SALHS4.541e-1543.56Diaminopimelate epimerase OS=Salmonella heidelberg... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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