FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:92..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PELTS (Diaminopimelate epimerase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=dapF PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.233e-21
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            +HF K HGLGNDFILVD  +    P   P  A K+CDR+FG+GADG++  +P  +  D +MRIFN DGSE EMCGN +RC A+++ E
Sbjct:    1 MHFTKAHGLGNDFILVDCFKEKVNPEDFPGLAVKMCDRHFGVGADGLVLLLPSPSA-DVSMRIFNPDGSEAEMCGNAIRCVAKYLYE 86          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_DESHD (Diaminopimelate epimerase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dapF PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.233e-21
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            +  VK HGLGNDF+ +D+       +   PE A KLC R FG+G DG+I  +P  +  D  MRI NSDGSEPEMCGNG+RCFAR+I
Sbjct:    1 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPS-DKADARMRILNSDGSEPEMCGNGIRCFARYI 85          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_DESAH (Diaminopimelate epimerase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=dapF PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.611e-20
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ--AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L+F K  GLGNDF+++D+RN    +  P    A+KLC R FG+G DG+I  +      D   +IFN DGSEPEMCGNG+RCFA+ + E + +  KQ FTV T
Sbjct:    3 LNFTKMEGLGNDFVMLDDRNGAIVQTVPYPVLAKKLCSRRFGVGGDGIIIIIDSETA-DVGFKIFNPDGSEPEMCGNGMRCFAKLVFE-QGIVTKQRFTVET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_NATTJ (Diaminopimelate epimerase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=dapF PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.748e-20
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT---DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ 607
            + F K HGLGNDFIL+ +      R  P+ A++LCDR FGIGADG++      N     DY MRI+NSDGSE EMCGN +RC A+++A+ E  +GK+
Sbjct:    1 MKFEKMHGLGNDFILMKDFQ----RNYPDLAKRLCDRRFGIGADGLVIYSSCKNSNINADYQMRIYNSDGSEAEMCGNAIRCLAKYLAKTEETDGKR 93          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CARHZ (Diaminopimelate epimerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dapF PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.748e-20
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVD---NRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ 607
            + F+K HGLGNDF++VD   N+N     ++ + A+K+CDR FGIGADG++  +P     D+ MRI NSDGSE EMCGN +RC AR+  E  N   KQ
Sbjct:    1 MEFLKMHGLGNDFVVVDEIKNQNLVNKNLS-DLAKKICDRRFGIGADGLVLLLPSEKA-DFKMRIINSDGSEAEMCGNAIRCVARYYVEKYNPAKKQ 95          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_THETN (Diaminopimelate epimerase OS=Thermoanaerobacter tengcongensis GN=dapF PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.590e-20
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDFI+++   + E     E A KLCDR+FGIGADG++   P  +  D  MRIFN+DGSE EMCGNG RCFA+++ E + +  KQ  TV T
Sbjct:    1 MRFTKMHGLGNDFIVIE---AVEGVDYSELAVKLCDRHFGIGADGLLVVEPS-HIADIKMRIFNADGSEAEMCGNGSRCFAKYVYE-KGIVSKQKMTVET 95          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ELUMP (Diaminopimelate epimerase OS=Elusimicrobium minutum (strain Pei191) GN=dapF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--EKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSF 613
            + FVKY GLGNDFIL+D     + +I    A  +KLCDR+FGIGADG+I   P  +  DY +RI NSDG+EPEMCGNG+RC  RF+ +      K +F
Sbjct:    1 MEFVKYQGLGNDFILID---CVKIKIDGLNALGKKLCDRHFGIGADGLIAVFPSASA-DYKIRIINSDGTEPEMCGNGIRCAMRFVFDYIKPQRKLTF 94          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CELJU (Diaminopimelate epimerase OS=Cellvibrio japonicus (strain Ueda107) GN=dapF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++D  + T  R+TPE+  KL DR+FG+G D V+   +P     D+  RIFN DGSE E CGNG RCFA F+ E   L GK+   V T
Sbjct:    3 IRFSKMHGLGNDFVVIDGISQTV-RLTPEKIRKLADRHFGVGCDQVLLVEIPEQPNVDFRYRIFNCDGSEVENCGNGARCFAVFVRE-RRLTGKRVIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIN (Diaminopimelate epimerase OS=Leptospira interrogans GN=dapF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.781e-19
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            L F K  G+GND++ +D+  + + R+TPEQ +K+ DRNFGIG+DGVIF      G D+ M ++NSDGS  EMCGNG+RC A++I
Sbjct:    4 LKFTKMEGIGNDYVYIDSTRN-DIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMMDMYNSDGSSSEMCGNGIRCVAKYI 85          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIC (Diaminopimelate epimerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dapF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.781e-19
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            L F K  G+GND++ +D+  + + R+TPEQ +K+ DRNFGIG+DGVIF      G D+ M ++NSDGS  EMCGNG+RC A++I
Sbjct:    4 LKFTKMEGIGNDYVYIDSTRN-DIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMMDMYNSDGSSSEMCGNGIRCVAKYI 85          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_PELTS7.233e-2154.02Diaminopimelate epimerase OS=Pelotomaculum thermop... [more]
DAPF_DESHD7.233e-2154.65Diaminopimelate epimerase OS=Desulfitobacterium ha... [more]
DAPF_DESAH1.611e-2049.02Diaminopimelate epimerase OS=Desulfobacterium auto... [more]
DAPF_NATTJ2.748e-2050.52Diaminopimelate epimerase OS=Natranaerobius thermo... [more]
DAPF_CARHZ2.748e-2050.52Diaminopimelate epimerase OS=Carboxydothermus hydr... [more]
DAPF_THETN3.590e-2052.00Diaminopimelate epimerase OS=Thermoanaerobacter te... [more]
DAPF_ELUMP7.997e-2052.04Diaminopimelate epimerase OS=Elusimicrobium minutu... [more]
DAPF_CELJU7.997e-2049.50Diaminopimelate epimerase OS=Cellvibrio japonicus ... [more]
DAPF_LEPIN1.781e-1952.38Diaminopimelate epimerase OS=Leptospira interrogan... [more]
DAPF_LEPIC1.781e-1952.38Diaminopimelate epimerase OS=Leptospira interrogan... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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