FC876448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECOL6 (Diaminopimelate epimerase OS=Escherichia coli O6 GN=dapF PE=3 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14 Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF++VD + +P+ +L DR+ G+G D ++ P + D+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T Sbjct: 1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACIAC (Diaminopimelate epimerase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=dapF PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14 Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAEKLCDRNFGIGADGVIFAMPG-VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K G GNDF+++D T+ R+ TP Q L DR+FG+GAD ++ P G D+ I N+DG E E CGNG RCFAR++ + + L + + V T Sbjct: 3 IRFTKMQGAGNDFVVLDE---TQGRLGLTPAQYRYLADRHFGVGADQILTVRPSPAEGIDFEYVIHNADGGEVEQCGNGARCFARYVRD-KGLTDRDTIRVQT 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METKA (Diaminopimelate epimerase OS=Methanopyrus kandleri GN=dapF PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14 Identity = 43/98 (43.88%), Postives = 53/98 (54.08%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK 604 + F K HG NDF+LVD TE + PE A CDR G+GADGV+F + MRIFN DGSE E CGN RC +++ E+ N K Sbjct: 1 MQFWKVHGARNDFVLVDE---TEEEVVPESDKPDFARWACDRRSGVGADGVVFIRSDPPSVE--MRIFNRDGSEAEFCGNAARCVVKYVTEVRGENVK 93
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ERYLH (Diaminopimelate epimerase OS=Erythrobacter litoralis (strain HTCC2594) GN=dapF PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14 Identity = 42/88 (47.73%), Postives = 50/88 (56.82%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL 595 F K HGLGNDFI++D R + P +T A L DR GIG D VI P + D+ MRIFN+DG E E CGN R A E N+ Sbjct: 5 FTKMHGLGNDFIMLDARAESLPPMTAATARALADRKTGIGCDQVILLEPS-DSADFRMRIFNADGGEVEACGNASRAVALLHGEAANV 91
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_THISH (Diaminopimelate epimerase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14 Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN--GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF+++D + ++P+Q L R FG+G D V+ + D+ RIFN+DG+E E CGNG RCFA F+ E L K V T Sbjct: 3 IQFSKMHGLGNDFVVIDAIHQPVD-LSPDQVRLLAHRRFGVGCDQVLLVERPSDPAAADFRYRIFNADGNEVEQCGNGARCFAVFVRE-RGLTAKDHIPVET 102
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_NITOC (Diaminopimelate epimerase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14 Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPG-VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 F K GLGNDF+++D S +T Q + +R GIG D V+ P + D+ RIFN+DG E E CGNG RCFARF+ E + L K V T Sbjct: 5 FTKMQGLGNDFVVIDAL-SQPLSLTASQVRWIANRRLGIGCDQVLLVTPASLPAIDFGYRIFNADGGEVEQCGNGARCFARFVRE-QGLTDKNVLRVQT 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_NEIMB (Diaminopimelate epimerase OS=Neisseria meningitidis serogroup B GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14 Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAE--KLCDRNFGIGADGV-IFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D + TPE A + DR G+G D + + G D+ RIFN+DGSE CGNG RCFARF+A+ + L K+ V T Sbjct: 4 LKFTKMHGLGNDFMVID---AVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDFRYRIFNADGSEVGQCGNGARCFARFVAD-KGLTDKKEICVET 102
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_COXBU (Diaminopimelate epimerase OS=Coxiella burnetii GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14 Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 ++F K G GNDF+++D T ++T Q +K+ +R FG+G D ++ P N + D+ RIFN+DGSE CGNG RC ARFI L+ ++ V T Sbjct: 3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFI-RAHQLSDREELRVST 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_COXBR (Diaminopimelate epimerase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14 Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 ++F K G GNDF+++D T ++T Q +K+ +R FG+G D ++ P N + D+ RIFN+DGSE CGNG RC ARFI L+ ++ V T Sbjct: 3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFI-RAHQLSDREELRVST 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_COXBN (Diaminopimelate epimerase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14 Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 ++F K G GNDF+++D T ++T Q +K+ +R FG+G D ++ P N + D+ RIFN+DGSE CGNG RC ARFI L+ ++ V T Sbjct: 3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFI-RAHQLSDREELRVST 101 The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bpback to top |