FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECOL6 (Diaminopimelate epimerase OS=Escherichia coli O6 GN=dapF PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +P+   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACIAC (Diaminopimelate epimerase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAEKLCDRNFGIGADGVIFAMPG-VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K  G GNDF+++D    T+ R+  TP Q   L DR+FG+GAD ++   P    G D+   I N+DG E E CGNG RCFAR++ + + L  + +  V T
Sbjct:    3 IRFTKMQGAGNDFVVLDE---TQGRLGLTPAQYRYLADRHFGVGADQILTVRPSPAEGIDFEYVIHNADGGEVEQCGNGARCFARYVRD-KGLTDRDTIRVQT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METKA (Diaminopimelate epimerase OS=Methanopyrus kandleri GN=dapF PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14
Identity = 43/98 (43.88%), Postives = 53/98 (54.08%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK 604
            + F K HG  NDF+LVD    TE  + PE      A   CDR  G+GADGV+F        +  MRIFN DGSE E CGN  RC  +++ E+   N K
Sbjct:    1 MQFWKVHGARNDFVLVDE---TEEEVVPESDKPDFARWACDRRSGVGADGVVFIRSDPPSVE--MRIFNRDGSEAEFCGNAARCVVKYVTEVRGENVK 93          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ERYLH (Diaminopimelate epimerase OS=Erythrobacter litoralis (strain HTCC2594) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14
Identity = 42/88 (47.73%), Postives = 50/88 (56.82%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL 595
            F K HGLGNDFI++D R  + P +T   A  L DR  GIG D VI   P  +  D+ MRIFN+DG E E CGN  R  A    E  N+
Sbjct:    5 FTKMHGLGNDFIMLDARAESLPPMTAATARALADRKTGIGCDQVILLEPS-DSADFRMRIFNADGGEVEACGNASRAVALLHGEAANV 91          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_THISH (Diaminopimelate epimerase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN--GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++D  +     ++P+Q   L  R FG+G D V+      +    D+  RIFN+DG+E E CGNG RCFA F+ E   L  K    V T
Sbjct:    3 IQFSKMHGLGNDFVVIDAIHQPVD-LSPDQVRLLAHRRFGVGCDQVLLVERPSDPAAADFRYRIFNADGNEVEQCGNGARCFAVFVRE-RGLTAKDHIPVET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_NITOC (Diaminopimelate epimerase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPG-VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K  GLGNDF+++D   S    +T  Q   + +R  GIG D V+   P  +   D+  RIFN+DG E E CGNG RCFARF+ E + L  K    V T
Sbjct:    5 FTKMQGLGNDFVVIDAL-SQPLSLTASQVRWIANRRLGIGCDQVLLVTPASLPAIDFGYRIFNADGGEVEQCGNGARCFARFVRE-QGLTDKNVLRVQT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_NEIMB (Diaminopimelate epimerase OS=Neisseria meningitidis serogroup B GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAE--KLCDRNFGIGADGV-IFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   +     TPE A   +  DR  G+G D + +       G D+  RIFN+DGSE   CGNG RCFARF+A+ + L  K+   V T
Sbjct:    4 LKFTKMHGLGNDFMVID---AVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDFRYRIFNADGSEVGQCGNGARCFARFVAD-KGLTDKKEICVET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_COXBU (Diaminopimelate epimerase OS=Coxiella burnetii GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            ++F K  G GNDF+++D    T  ++T  Q +K+ +R FG+G D ++   P  N + D+  RIFN+DGSE   CGNG RC ARFI     L+ ++   V T
Sbjct:    3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFI-RAHQLSDREELRVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_COXBR (Diaminopimelate epimerase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            ++F K  G GNDF+++D    T  ++T  Q +K+ +R FG+G D ++   P  N + D+  RIFN+DGSE   CGNG RC ARFI     L+ ++   V T
Sbjct:    3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFI-RAHQLSDREELRVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_COXBN (Diaminopimelate epimerase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            ++F K  G GNDF+++D    T  ++T  Q +K+ +R FG+G D ++   P  N + D+  RIFN+DGSE   CGNG RC ARFI     L+ ++   V T
Sbjct:    3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFI-RAHQLSDREELRVST 101          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_ECOL61.012e-1442.57Diaminopimelate epimerase OS=Escherichia coli O6 G... [more]
DAPF_ACIAC1.012e-1440.78Diaminopimelate epimerase OS=Acidovorax avenae sub... [more]
DAPF_METKA1.321e-1443.88Diaminopimelate epimerase OS=Methanopyrus kandleri... [more]
DAPF_ERYLH1.321e-1447.73Diaminopimelate epimerase OS=Erythrobacter litoral... [more]
DAPF_THISH1.726e-1441.18Diaminopimelate epimerase OS=Thioalkalivibrio sp. ... [more]
DAPF_NITOC1.726e-1443.43Diaminopimelate epimerase OS=Nitrosococcus oceani ... [more]
DAPF_NEIMB1.726e-1443.69Diaminopimelate epimerase OS=Neisseria meningitidi... [more]
DAPF_COXBU1.726e-1440.59Diaminopimelate epimerase OS=Coxiella burnetii GN=... [more]
DAPF_COXBR1.726e-1440.59Diaminopimelate epimerase OS=Coxiella burnetii (st... [more]
DAPF_COXBN1.726e-1440.59Diaminopimelate epimerase OS=Coxiella burnetii (st... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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