FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_COXB2 (Diaminopimelate epimerase OS=Coxiella burnetii (strain CbuG_Q212) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            ++F K  G GNDF+++D    T  ++T  Q +K+ +R FG+G D ++   P  N + D+  RIFN+DGSE   CGNG RC ARFI     L+ ++   V T
Sbjct:    3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFI-RAHQLSDREELRVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_COXB1 (Diaminopimelate epimerase OS=Coxiella burnetii (strain CbuK_Q154) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            ++F K  G GNDF+++D    T  ++T  Q +K+ +R FG+G D ++   P  N + D+  RIFN+DGSE   CGNG RC ARFI     L+ ++   V T
Sbjct:    3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFI-RAHQLSDREELRVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_VARPS (Diaminopimelate epimerase OS=Variovorax paradoxus (strain S110) GN=dapF PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP----GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K  G GNDF+++D    T   +T  Q   L DR+FG+GAD ++   P       G D+   I N+DG E E CGNG RCF RF+ E  +L  K +  V T
Sbjct:    3 IRFTKMQGAGNDFVVLDETRGTLG-LTAAQYRFLADRHFGVGADQILTVRPPSKGAAEGVDFQYVIHNADGGEVEQCGNGARCFMRFVRE-HHLTDKDTVRVET 104          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_NEIMA (Diaminopimelate epimerase OS=Neisseria meningitidis serogroup A GN=dapF PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 45/103 (43.69%), Postives = 58/103 (56.31%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAE--KLCDRNFGIGADGV-IFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   +     TPE A      DR  G+G D + +       G D+  RIFN+DGSE   CGNG RCFARF+A+ + L  K+   V T
Sbjct:    4 LKFTKMHGLGNDFMVID---AVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYRIFNADGSEVGQCGNGARCFARFVAD-KGLTDKKEICVET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEGPA (Diaminopimelate epimerase OS=Legionella pneumophila (strain Paris) GN=dapF PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADG-VIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDFI++D  N +  ++T +Q +KL +R+ GIG D  ++       G D+  RIFN+DG E   CGNG RC A F A    L  K   TV T
Sbjct:    3 IKFTKMHGLGNDFIVLDGVNQSI-QLTVKQIQKLANRHTGIGFDQCLLIESSQTEGIDFNYRIFNADGQEVGQCGNGARCIALF-ARYYGLTAKNKLTVAT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BRAHW (Diaminopimelate epimerase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=dapF PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEK----LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARF 574
            L F K HG GND+I +   N  + + T E A K    L  R++ IGADG+I  MP  +  D  MR+FN DGSE EMCGNG+RC A++
Sbjct:    3 LSFTKMHGTGNDYIYI---NCFKEKFTVEDAIKYSPILSHRHYSIGADGIILIMPS-DKADVQMRMFNYDGSESEMCGNGIRCVAKY 85          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SPHAL (Diaminopimelate epimerase OS=Sphingopyxis alaskensis GN=dapF PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.844e-14
Identity = 43/93 (46.24%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI---AELENLNG 601
            F K HGLGNDF+++D R +    +TP +A  + DR  GIG D +I   P  +  D  MRIFN+DG E E CGN  RC A  I   A +E L G
Sbjct:    5 FTKMHGLGNDFVVIDARVAPV-EMTPARAHAIADRRHGIGCDQLILLEPSTSA-DVKMRIFNADGGEVEACGNATRCVATLIGKPAVIETLAG 95          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_EUBR3 (Diaminopimelate epimerase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=dapF PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKL--CDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HG GND++ V   N  E ++       +   DR+FGIG+DG+I   P  +  D+ MRI+N+DGSE EMCGNG+RC A+++ +   L  K   +V T
Sbjct:    1 MKFTKMHGCGNDYVYV---NLFEEKLDDPARVSIYVSDRHFGIGSDGLITIGPS-DKADFRMRIYNADGSEAEMCGNGIRCVAKYVYD-HKLTDKTEISVET 97          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_DIAST (Diaminopimelate epimerase OS=Diaphorobacter sp. (strain TPSY) GN=dapF PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K  G GNDF+++D    T+ R+  TP Q   L DR+FG+GAD ++   P    G D+   I N+DG + E CGNG RCFAR++ + + L  + +  V T
Sbjct:    3 IRFTKMQGAGNDFVVLDE---TQGRLGLTPAQYRFLADRHFGVGADQILTVRPSPGAGIDFEYVIHNADGGQVEQCGNGARCFARYVRD-KGLTAQDTIRVQT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RALME (Diaminopimelate epimerase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dapF PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGV-NGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDFI++D  +  +  +T  Q   L +R+FGIGAD ++       +  D+  RI N+DG E E CGNG RCF RF+ +   +  KQS  V
Sbjct:    3 LQFTKMHGAGNDFIVLDGIHQ-KLDLTDAQWRALANRHFGIGADQILIVEKSSRDDVDFRYRIVNADGGEVEHCGNGARCFVRFVTD-RGMTDKQSVRV 99          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_COXB21.726e-1440.59Diaminopimelate epimerase OS=Coxiella burnetii (st... [more]
DAPF_COXB11.726e-1440.59Diaminopimelate epimerase OS=Coxiella burnetii (st... [more]
DAPF_VARPS2.943e-1440.38Diaminopimelate epimerase OS=Variovorax paradoxus ... [more]
DAPF_NEIMA2.943e-1443.69Diaminopimelate epimerase OS=Neisseria meningitidi... [more]
DAPF_LEGPA2.943e-1443.56Diaminopimelate epimerase OS=Legionella pneumophil... [more]
DAPF_BRAHW2.943e-1448.28Diaminopimelate epimerase OS=Brachyspira hyodysent... [more]
DAPF_SPHAL3.844e-1446.24Diaminopimelate epimerase OS=Sphingopyxis alaskens... [more]
DAPF_EUBR35.020e-1441.18Diaminopimelate epimerase OS=Eubacterium rectale (... [more]
DAPF_DIAST5.020e-1439.81Diaminopimelate epimerase OS=Diaphorobacter sp. (s... [more]
DAPF_RALME8.564e-1442.42Diaminopimelate epimerase OS=Ralstonia metallidura... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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