FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACHD (Diaminopimelate epimerase OS=Bacillus halodurans GN=dapF PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE----------LENLNGKQSFTVH 622
            + F K HGLGN +I VD  +   +    P  A  + D+N GIG+DG+I   P  +     MR+FN+DGSE + CGNG+RC A+F  E          +E L G    TVH
Sbjct:    1 MKFTKMHGLGNSYIYVDCFKELLKEEELPALAVAVADKNKGIGSDGMILICPS-DRAPVKMRVFNNDGSEAKNCGNGLRCVAKFAFEHGYVKETSFDVETLGGLVKATVH 109          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RICPR (Diaminopimelate epimerase OS=Rickettsia prowazekii GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            ++FVK HGLGNDF++V+ R+          A+ + DR+ GIG D  I      N   YTM I+N DGS  ++CGN +RC A+ I  L+   GKQ+ TV
Sbjct:    5 INFVKMHGLGNDFVIVNKRDLATSYNLSHLAKNMADRHTGIGCDQCIIYEE--NNDFYTMIIYNIDGSSAKLCGNAIRCLAKLI-YLD--TGKQNITV 97          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PROMH (Diaminopimelate epimerase OS=Proteus mirabilis (strain HI4320) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L +R+ G+G D ++    P     D+  RIFN+DGSE   CGNG RCFARF+  ++ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RIKGLTNKREIKVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CORA7 (Diaminopimelate epimerase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 46/115 (40.00%), Postives = 61/115 (53.04%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAM---------------PGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HG  NDF++V+    T P + PE+   LCDR  GIGADGV+  +               PG+N  D+ M   N+DGS  EMCGNG R FA ++     L  + +FTV T
Sbjct:    1 MKFAKGHGTENDFVIVEG---TGP-LPPEKVVALCDRRAGIGADGVLRIIRAGELLASGEIDELAPGINADDWFMDYRNADGSVAEMCGNGTRVFAHWVRS-RGLLEEDTFTVGT 110          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BLOPB (Diaminopimelate epimerase OS=Blochmannia pennsylvanicus (strain BPEN) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K +GLGNDF+++D   +    +T E    L DR +G+G D ++   P  +   D+  RI+NSDG+E   CGNG+RC A+F+  L+ L  K++  + T
Sbjct:    1 MRFTKMNGLGNDFVIID-AVTQNIHLTSENIRYLSDRFYGVGFDQLLIVEPPYDPAIDFHCRIYNSDGTEVNQCGNGMRCVAQFVC-LKKLTNKRNIHIST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BLOFL (Diaminopimelate epimerase OS=Blochmannia floridanus GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++D+    +     ++   L +R +GIG D ++   P  +   D+  RI+N+DGSE   CGNG+RC ARF+  ++ L  KQ   + T
Sbjct:    1 MRFSKMHGLGNDFVIIDSITQ-KVYFNSDKIRSLSNRFYGIGFDQLLVVEPPYDPNIDFHCRIYNADGSEVYQCGNGIRCVARFVC-IKKLTNKQHIKIST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XANCP (Diaminopimelate epimerase OS=Xanthomonas campestris pv. campestris GN=dapF PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 2
Query:  317 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVI-FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNG-----KQSFTVH 622
            +G L F K HG GNDF+++D RN T P      A +L DR+FG+G D ++    P         RI+NSDGS  + CGNG RC A ++       G        FT H
Sbjct:    7 TGRLRFTKMHGAGNDFVVLDLRNGTPPP-DASLAARLADRHFGVGCDQILTIETPRSAEAVAAYRIWNSDGSHSQQCGNGARCVAAWLVREGTAQGDVFTIDSPFTAH 113          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XANCB (Diaminopimelate epimerase OS=Xanthomonas campestris pv. campestris (strain B100) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 2
Query:  317 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVI-FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNG-----KQSFTVH 622
            +G L F K HG GNDF+++D RN T P      A +L DR+FG+G D ++    P         RI+NSDGS  + CGNG RC A ++       G        FT H
Sbjct:    7 TGRLRFTKMHGAGNDFVVLDLRNGTPPP-DASLAARLADRHFGVGCDQILTIETPRSAEAVAAYRIWNSDGSHSQQCGNGARCVAAWLVREGTAQGDVFTIDSPFTAH 113          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XANC8 (Diaminopimelate epimerase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 2
Query:  317 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVI-FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNG-----KQSFTVH 622
            +G L F K HG GNDF+++D RN T P      A +L DR+FG+G D ++    P         RI+NSDGS  + CGNG RC A ++       G        FT H
Sbjct:    7 TGRLRFTKMHGAGNDFVVLDLRNGTPPP-DASLAARLADRHFGVGCDQILTIETPRSAEAVAAYRIWNSDGSHSQQCGNGARCVAAWLVREGTAQGDVFTIDSPFTAH 113          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ZYMMO (Diaminopimelate epimerase OS=Zymomonas mobilis GN=dapF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            F K HGLGNDFI++D R +   ++ P  A+ L +R+ GIG D +I    G N  D +M I+N+DGSE E CGN  RC   F+
Sbjct:    5 FHKMHGLGNDFIVLDARKNPI-QMNPALAQALSNRHTGIGCDQLIIIGNGKNQADVSMEIWNADGSEVEACGNATRCVPVFL 85          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_BACHD3.254e-1340.00Diaminopimelate epimerase OS=Bacillus halodurans G... [more]
DAPF_RICPR4.250e-1342.86Diaminopimelate epimerase OS=Rickettsia prowazekii... [more]
DAPF_PROMH4.250e-1341.58Diaminopimelate epimerase OS=Proteus mirabilis (st... [more]
DAPF_CORA74.250e-1340.00Diaminopimelate epimerase OS=Corynebacterium aurim... [more]
DAPF_BLOPB4.250e-1337.62Diaminopimelate epimerase OS=Blochmannia pennsylva... [more]
DAPF_BLOFL4.250e-1337.62Diaminopimelate epimerase OS=Blochmannia floridanu... [more]
DAPF_XANCP5.551e-1338.89Diaminopimelate epimerase OS=Xanthomonas campestri... [more]
DAPF_XANCB5.551e-1338.89Diaminopimelate epimerase OS=Xanthomonas campestri... [more]
DAPF_XANC85.551e-1338.89Diaminopimelate epimerase OS=Xanthomonas campestri... [more]
DAPF_ZYMMO9.468e-1346.34Diaminopimelate epimerase OS=Zymomonas mobilis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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