FC876448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACHD (Diaminopimelate epimerase OS=Bacillus halodurans GN=dapF PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13 Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE----------LENLNGKQSFTVH 622 + F K HGLGN +I VD + + P A + D+N GIG+DG+I P + MR+FN+DGSE + CGNG+RC A+F E +E L G TVH Sbjct: 1 MKFTKMHGLGNSYIYVDCFKELLKEEELPALAVAVADKNKGIGSDGMILICPS-DRAPVKMRVFNNDGSEAKNCGNGLRCVAKFAFEHGYVKETSFDVETLGGLVKATVH 109
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RICPR (Diaminopimelate epimerase OS=Rickettsia prowazekii GN=dapF PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13 Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619 ++FVK HGLGNDF++V+ R+ A+ + DR+ GIG D I N YTM I+N DGS ++CGN +RC A+ I L+ GKQ+ TV Sbjct: 5 INFVKMHGLGNDFVIVNKRDLATSYNLSHLAKNMADRHTGIGCDQCIIYEE--NNDFYTMIIYNIDGSSAKLCGNAIRCLAKLI-YLD--TGKQNITV 97
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PROMH (Diaminopimelate epimerase OS=Proteus mirabilis (strain HI4320) GN=dapF PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13 Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF++VD + +PE +L +R+ G+G D ++ P D+ RIFN+DGSE CGNG RCFARF+ ++ L K+ V T Sbjct: 1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RIKGLTNKREIKVST 99
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CORA7 (Diaminopimelate epimerase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=dapF PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13 Identity = 46/115 (40.00%), Postives = 61/115 (53.04%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAM---------------PGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HG NDF++V+ T P + PE+ LCDR GIGADGV+ + PG+N D+ M N+DGS EMCGNG R FA ++ L + +FTV T Sbjct: 1 MKFAKGHGTENDFVIVEG---TGP-LPPEKVVALCDRRAGIGADGVLRIIRAGELLASGEIDELAPGINADDWFMDYRNADGSVAEMCGNGTRVFAHWVRS-RGLLEEDTFTVGT 110
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BLOPB (Diaminopimelate epimerase OS=Blochmannia pennsylvanicus (strain BPEN) GN=dapF PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13 Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K +GLGNDF+++D + +T E L DR +G+G D ++ P + D+ RI+NSDG+E CGNG+RC A+F+ L+ L K++ + T Sbjct: 1 MRFTKMNGLGNDFVIID-AVTQNIHLTSENIRYLSDRFYGVGFDQLLIVEPPYDPAIDFHCRIYNSDGTEVNQCGNGMRCVAQFVC-LKKLTNKRNIHIST 99
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BLOFL (Diaminopimelate epimerase OS=Blochmannia floridanus GN=dapF PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.250e-13 Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF+++D+ + ++ L +R +GIG D ++ P + D+ RI+N+DGSE CGNG+RC ARF+ ++ L KQ + T Sbjct: 1 MRFSKMHGLGNDFVIIDSITQ-KVYFNSDKIRSLSNRFYGIGFDQLLVVEPPYDPNIDFHCRIYNADGSEVYQCGNGIRCVARFVC-IKKLTNKQHIKIST 99
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XANCP (Diaminopimelate epimerase OS=Xanthomonas campestris pv. campestris GN=dapF PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13 Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 2 Query: 317 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVI-FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNG-----KQSFTVH 622 +G L F K HG GNDF+++D RN T P A +L DR+FG+G D ++ P RI+NSDGS + CGNG RC A ++ G FT H Sbjct: 7 TGRLRFTKMHGAGNDFVVLDLRNGTPPP-DASLAARLADRHFGVGCDQILTIETPRSAEAVAAYRIWNSDGSHSQQCGNGARCVAAWLVREGTAQGDVFTIDSPFTAH 113
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XANCB (Diaminopimelate epimerase OS=Xanthomonas campestris pv. campestris (strain B100) GN=dapF PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13 Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 2 Query: 317 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVI-FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNG-----KQSFTVH 622 +G L F K HG GNDF+++D RN T P A +L DR+FG+G D ++ P RI+NSDGS + CGNG RC A ++ G FT H Sbjct: 7 TGRLRFTKMHGAGNDFVVLDLRNGTPPP-DASLAARLADRHFGVGCDQILTIETPRSAEAVAAYRIWNSDGSHSQQCGNGARCVAAWLVREGTAQGDVFTIDSPFTAH 113
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XANC8 (Diaminopimelate epimerase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dapF PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13 Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 2 Query: 317 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVI-FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNG-----KQSFTVH 622 +G L F K HG GNDF+++D RN T P A +L DR+FG+G D ++ P RI+NSDGS + CGNG RC A ++ G FT H Sbjct: 7 TGRLRFTKMHGAGNDFVVLDLRNGTPPP-DASLAARLADRHFGVGCDQILTIETPRSAEAVAAYRIWNSDGSHSQQCGNGARCVAAWLVREGTAQGDVFTIDSPFTAH 113
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ZYMMO (Diaminopimelate epimerase OS=Zymomonas mobilis GN=dapF PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13 Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577 F K HGLGNDFI++D R + ++ P A+ L +R+ GIG D +I G N D +M I+N+DGSE E CGN RC F+ Sbjct: 5 FHKMHGLGNDFIVLDARKNPI-QMNPALAQALSNRHTGIGCDQLIIIGNGKNQADVSMEIWNADGSEVEACGNATRCVPVFL 85 The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bpback to top |