FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XANAC (Diaminopimelate epimerase OS=Xanthomonas axonopodis pv. citri GN=dapF PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 2
Query:  317 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVI-FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ 607
            SG L F K HG GNDF+++D R+ T P      A +L DR+FGIG D ++    P   G      I+NSDGS    CGNG RC A ++       G++
Sbjct:    7 SGRLRFTKMHGAGNDFVVLDLRDGTPPP-DAALAAQLADRHFGIGCDQILTIEAPRSEGAAAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGER 103          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RHOCS (Diaminopimelate epimerase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dapF PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F+K HGLGNDF+++D R    P +T   A  + DR+ G+G D ++   P  +   D  MRI N DGSE   CGN  RC A  +A+    +G+   TV T
Sbjct:    5 FLKMHGLGNDFVVLDARRDPLP-LTTAAARAIADRHTGVGCDQIVLLEPPRHPAADLFMRILNPDGSESGACGNATRCVASLVAD---GSGRAEVTVET 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XANC5 (Diaminopimelate epimerase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 39/98 (39.80%), Postives = 53/98 (54.08%), Query Frame = 2
Query:  317 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVI-FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ 607
            SG L F K HG GNDF+++D R+ T P      A +L DR+FG+G D ++    P   G      I+NSDGS    CGNG RC A ++       G++
Sbjct:    7 SGRLRFTKMHGAGNDFVVLDLRDGTPPP-DAALAAQLADRHFGVGCDQILTIEAPRSEGAVAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGER 103          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_GEOTN (Diaminopimelate epimerase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRIT-PEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I VD    T P    P  A  + D + GIG+DG+I   P        MRIFNSDGSE + CGNG+RC A++  E   +   +SF + T
Sbjct:    6 FTKMHGLGNSYIYVDLFRETLPEEDLPAIARSVADVHTGIGSDGLILICPSEQAP-VKMRIFNSDGSEGKNCGNGLRCVAKYAYE-HGIVRDRSFLIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BAUCH (Diaminopimelate epimerase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=dapF PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD        ++P +   L +R+ G+G D ++F  P  +   D+  RIFN+DGSE   CGNG RC A F+  ++ L  K+   + T
Sbjct:    1 MQFSKMHGLGNDFMVVDVVTQNV-YLSPTKIRFLANRHSGVGFDQLLFVEPPYDPEIDFHYRIFNADGSEVTQCGNGARCLAHFV-RMKKLTNKREIYIST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XANOM (Diaminopimelate epimerase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 2
Query:  317 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVI-FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            SG L F K HG GNDF+++D R+ T P      A +L DR+FG+G D ++    P   G      I+NSDGS    CGNG RC A ++
Sbjct:    7 SGRLRFTKMHGAGNDFVVLDLRDGTPPP-DAALAAQLADRHFGVGCDQILTIEAPRSEGAVAAYGIWNSDGSAARQCGNGARCVAAWL 93          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_GEOKA (Diaminopimelate epimerase OS=Geobacillus kaustophilus GN=dapF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 42/99 (42.42%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRIT-PEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I VD    T P    P  A  + D + GIG+DG+I   P        MRIFNSDGSE + CGNG+RC A++  E   +   ++F + T
Sbjct:    6 FTKMHGLGNSYIYVDLFRETLPEEELPAIARSVADVHTGIGSDGLILICPSEKAP-VKMRIFNSDGSEGKNCGNGLRCVAKYAYE-HGIVSDRTFLIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACCR (Diaminopimelate epimerase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E   L  +  FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACC4 (Diaminopimelate epimerase OS=Bacillus cereus (strain B4264) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E   L  +  FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACC2 (Diaminopimelate epimerase OS=Bacillus cereus (strain G9842) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E   L  +  FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIET 102          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_XANAC9.468e-1340.82Diaminopimelate epimerase OS=Xanthomonas axonopodi... [more]
DAPF_RHOCS1.237e-1240.40Diaminopimelate epimerase OS=Rhodospirillum centen... [more]
DAPF_XANC51.615e-1239.80Diaminopimelate epimerase OS=Xanthomonas campestri... [more]
DAPF_GEOTN1.615e-1243.43Diaminopimelate epimerase OS=Geobacillus thermoden... [more]
DAPF_BAUCH1.615e-1238.61Diaminopimelate epimerase OS=Baumannia cicadellini... [more]
DAPF_XANOM2.109e-1243.18Diaminopimelate epimerase OS=Xanthomonas oryzae pv... [more]
DAPF_GEOKA2.109e-1242.42Diaminopimelate epimerase OS=Geobacillus kaustophi... [more]
DAPF_BACCR2.109e-1244.12Diaminopimelate epimerase OS=Bacillus cereus (stra... [more]
DAPF_BACC42.109e-1244.12Diaminopimelate epimerase OS=Bacillus cereus (stra... [more]
DAPF_BACC22.109e-1244.12Diaminopimelate epimerase OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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