FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_GEOSW (Diaminopimelate epimerase OS=Geobacillus sp. (strain WCH70) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.755e-12
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPR-ITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V+    T P  +    A K+ + N GIGADG+I   P        MRIFNSDGSE + CGNG+RC A++  E   +   +SF + T
Sbjct:    6 FTKMHGLGNSYIYVNMFEETIPESLLSSLAVKVSNVNTGIGADGMILICPS-EVAPVKMRIFNSDGSEGKNCGNGLRCVAKYAYE-HGMVKDRSFFIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACTN (Diaminopimelate epimerase OS=Bacteroides thetaiotaomicron GN=dapF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.755e-12
Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HG GND+I VD   +  P   PE+ A +    + GIG+DG+I  +   +  D++MRIFN+DGSE  MCGNG RC  +++ E   L  K+  T+ T
Sbjct:    5 IKFTKMHGAGNDYIYVDT--TRYPIAAPEKKAIEWSKFHTGIGSDGLIL-IGSSDKADFSMRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTAKKEITLDT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACHK (Diaminopimelate epimerase OS=Bacillus thuringiensis subsp. konkukian GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E   L     FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACCZ (Diaminopimelate epimerase OS=Bacillus cereus (strain ZK / E33L) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E   L     FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACC7 (Diaminopimelate epimerase OS=Bacillus cereus (strain AH187) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E   L     FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACC3 (Diaminopimelate epimerase OS=Bacillus cereus (strain 03BB102) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E   L     FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACC1 (Diaminopimelate epimerase OS=Bacillus cereus (strain ATCC 10987) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E   L     FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACC0 (Diaminopimelate epimerase OS=Bacillus cereus (strain AH820) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E   L     FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACAN (Diaminopimelate epimerase OS=Bacillus anthracis GN=dapF PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E   L     FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACAH (Diaminopimelate epimerase OS=Bacillus thuringiensis (strain Al Hakam) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E   L     FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIET 102          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_GEOSW2.755e-1243.43Diaminopimelate epimerase OS=Geobacillus sp. (stra... [more]
DAPF_BACTN2.755e-1241.58Diaminopimelate epimerase OS=Bacteroides thetaiota... [more]
DAPF_BACHK3.598e-1244.12Diaminopimelate epimerase OS=Bacillus thuringiensi... [more]
DAPF_BACCZ3.598e-1244.12Diaminopimelate epimerase OS=Bacillus cereus (stra... [more]
DAPF_BACC73.598e-1244.12Diaminopimelate epimerase OS=Bacillus cereus (stra... [more]
DAPF_BACC33.598e-1244.12Diaminopimelate epimerase OS=Bacillus cereus (stra... [more]
DAPF_BACC13.598e-1244.12Diaminopimelate epimerase OS=Bacillus cereus (stra... [more]
DAPF_BACC03.598e-1244.12Diaminopimelate epimerase OS=Bacillus cereus (stra... [more]
DAPF_BACAN3.598e-1244.12Diaminopimelate epimerase OS=Bacillus anthracis GN... [more]
DAPF_BACAH3.598e-1244.12Diaminopimelate epimerase OS=Bacillus thuringiensi... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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