FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACAC (Diaminopimelate epimerase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E   L     FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACAA (Diaminopimelate epimerase OS=Bacillus anthracis (strain A0248) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E   L     FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XYLFT (Diaminopimelate epimerase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--EKLCDRNFGIGADGVIFAMP--GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            LHF K  G GNDF+++D R+ T P   P+ A    L DR+FGIG D VI   P  GV G     RI+N+DGS  + CGNG RC A ++
Sbjct:   10 LHFTKMQGAGNDFVVLDLRDGTPP---PDAALVAWLADRHFGIGCDQVIAIEPPRGV-GVFAAYRIWNADGSAAQQCGNGARCVAAWL 93          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XYLFM (Diaminopimelate epimerase OS=Xylella fastidiosa (strain M12) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--EKLCDRNFGIGADGVIFAMP--GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            LHF K  G GNDF+++D R+ T P   P+ A    L DR+FGIG D VI   P  GV G     RI+N+DGS  + CGNG RC A ++
Sbjct:   10 LHFTKMQGAGNDFVVLDLRDGTPP---PDAALVAWLADRHFGIGCDQVIAIEPPRGV-GVVAAYRIWNADGSAAQQCGNGARCVAAWL 93          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XYLF2 (Diaminopimelate epimerase OS=Xylella fastidiosa (strain M23) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--EKLCDRNFGIGADGVIFAMP--GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            LHF K  G GNDF+++D R+ T P   P+ A    L DR+FGIG D VI   P  GV G     RI+N+DGS  + CGNG RC A ++
Sbjct:   10 LHFTKMQGAGNDFVVLDLRDGTPP---PDAALVAWLADRHFGIGCDQVIAIEPPRGV-GVFAAYRIWNADGSAAQQCGNGARCVAAWL 93          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HYDS0 (Diaminopimelate epimerase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  338 KYHGLGNDFILVDNRNSTEPRITP-------EQAEKLCDRNFGIGADGVIFAMPGVNGTD-YTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            KY G GNDFI++DNR++   +          E   KLC+++  +GADGVI      N  + ++   FN+DGS  EMCGNG RC ARF  E
Sbjct:    5 KYQGSGNDFIIIDNRDNFVYKEIEKLGLSINEFVRKLCEQHTSVGADGVILIEKARNTKNHFSWAFFNADGSAAEMCGNGSRCAARFAYE 94          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_GRABC (Diaminopimelate epimerase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 35/81 (43.21%), Postives = 45/81 (55.56%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFA 568
            + F+K HGLGNDF++ D R      ++  QA  + DR  G+G D +I   P     D  MRI+N DGSE   CGN  RC A
Sbjct:    3 IDFIKMHGLGNDFVVFDARKGPSLALSGSQAAAIADRRTGVGCDQLIVLEPS-TVADAFMRIYNPDGSESGACGNATRCVA 82          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XYLFA (Diaminopimelate epimerase OS=Xylella fastidiosa GN=dapF PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--EKLCDRNFGIGADGVIFAMP--GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            LHF K  G GNDF+++D R+ T P   P+ A    L DR+FGIG D VI   P  GV G     RI+N+DGS  + CGNG RC A ++
Sbjct:   10 LHFTKMQGAGNDFVVLDLRDGTPP---PDVALVAWLADRHFGIGCDQVIAIEPPRGV-GVFAAYRIWNADGSAAQQCGNGARCVAAWL 93          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEPCP (Diaminopimelate epimerase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=dapF PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEK--LCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNS-DGSEPEMCGNGVRCFARFIAE 583
            LHF K  G GNDF+++D   +T   +    A+   L DR FG+GAD ++        G D+  RIFN   G E E CGNG RCFARF+ +
Sbjct:    3 LHFTKMQGAGNDFVVLD---ATRAPLALSAADYRFLGDRRFGVGADQILVVERSTTPGVDFRYRIFNGGSGDEVEQCGNGARCFARFVRD 89          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BUCBP (Diaminopimelate epimerase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=dapF PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDFI+++        +T    + L +R  GIG D ++      N   D+  RIFN++G+E   CGNG RCFA F+  L+ L  K++  V T
Sbjct:   12 IKFSKMHGLGNDFIIINAMMQKTFPVTSNIIQNLSNRYTGIGFDQLLLVENSKNVNIDFHYRIFNANGTEVSQCGNGARCFALFVL-LKKLTKKRTLYVST 111          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_BACAC3.598e-1244.12Diaminopimelate epimerase OS=Bacillus anthracis (s... [more]
DAPF_BACAA3.598e-1244.12Diaminopimelate epimerase OS=Bacillus anthracis (s... [more]
DAPF_XYLFT4.699e-1247.73Diaminopimelate epimerase OS=Xylella fastidiosa (s... [more]
DAPF_XYLFM4.699e-1247.73Diaminopimelate epimerase OS=Xylella fastidiosa (s... [more]
DAPF_XYLF24.699e-1247.73Diaminopimelate epimerase OS=Xylella fastidiosa (s... [more]
DAPF_HYDS04.699e-1243.33Diaminopimelate epimerase OS=Hydrogenobaculum sp. ... [more]
DAPF_GRABC4.699e-1243.21Diaminopimelate epimerase OS=Granulibacter bethesd... [more]
DAPF_XYLFA6.137e-1247.73Diaminopimelate epimerase OS=Xylella fastidiosa GN... [more]
DAPF_LEPCP8.015e-1243.33Diaminopimelate epimerase OS=Leptothrix cholodnii ... [more]
DAPF_BUCBP1.047e-1138.61Diaminopimelate epimerase OS=Buchnera aphidicola s... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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