FC876448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACAC (Diaminopimelate epimerase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=dapF PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12 Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 F K HGLGN +I V N E +I E AEK+ + N GIGADG+I P + MR+FN+DGSE + CGNG+RC A++ E L FT+ T Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIET 102
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACAA (Diaminopimelate epimerase OS=Bacillus anthracis (strain A0248) GN=dapF PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12 Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 F K HGLGN +I V N E +I E AEK+ + N GIGADG+I P + MR+FN+DGSE + CGNG+RC A++ E L FT+ T Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIET 102
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XYLFT (Diaminopimelate epimerase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=dapF PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--EKLCDRNFGIGADGVIFAMP--GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577 LHF K G GNDF+++D R+ T P P+ A L DR+FGIG D VI P GV G RI+N+DGS + CGNG RC A ++ Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPP---PDAALVAWLADRHFGIGCDQVIAIEPPRGV-GVFAAYRIWNADGSAAQQCGNGARCVAAWL 93
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XYLFM (Diaminopimelate epimerase OS=Xylella fastidiosa (strain M12) GN=dapF PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--EKLCDRNFGIGADGVIFAMP--GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577 LHF K G GNDF+++D R+ T P P+ A L DR+FGIG D VI P GV G RI+N+DGS + CGNG RC A ++ Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPP---PDAALVAWLADRHFGIGCDQVIAIEPPRGV-GVVAAYRIWNADGSAAQQCGNGARCVAAWL 93
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XYLF2 (Diaminopimelate epimerase OS=Xylella fastidiosa (strain M23) GN=dapF PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--EKLCDRNFGIGADGVIFAMP--GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577 LHF K G GNDF+++D R+ T P P+ A L DR+FGIG D VI P GV G RI+N+DGS + CGNG RC A ++ Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPP---PDAALVAWLADRHFGIGCDQVIAIEPPRGV-GVFAAYRIWNADGSAAQQCGNGARCVAAWL 93
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HYDS0 (Diaminopimelate epimerase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=dapF PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 2 Query: 338 KYHGLGNDFILVDNRNSTEPRITP-------EQAEKLCDRNFGIGADGVIFAMPGVNGTD-YTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 KY G GNDFI++DNR++ + E KLC+++ +GADGVI N + ++ FN+DGS EMCGNG RC ARF E Sbjct: 5 KYQGSGNDFIIIDNRDNFVYKEIEKLGLSINEFVRKLCEQHTSVGADGVILIEKARNTKNHFSWAFFNADGSAAEMCGNGSRCAARFAYE 94
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_GRABC (Diaminopimelate epimerase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=dapF PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 35/81 (43.21%), Postives = 45/81 (55.56%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFA 568 + F+K HGLGNDF++ D R ++ QA + DR G+G D +I P D MRI+N DGSE CGN RC A Sbjct: 3 IDFIKMHGLGNDFVVFDARKGPSLALSGSQAAAIADRRTGVGCDQLIVLEPS-TVADAFMRIYNPDGSESGACGNATRCVA 82
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_XYLFA (Diaminopimelate epimerase OS=Xylella fastidiosa GN=dapF PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12 Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--EKLCDRNFGIGADGVIFAMP--GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577 LHF K G GNDF+++D R+ T P P+ A L DR+FGIG D VI P GV G RI+N+DGS + CGNG RC A ++ Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPP---PDVALVAWLADRHFGIGCDQVIAIEPPRGV-GVFAAYRIWNADGSAAQQCGNGARCVAAWL 93
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEPCP (Diaminopimelate epimerase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=dapF PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12 Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEK--LCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNS-DGSEPEMCGNGVRCFARFIAE 583 LHF K G GNDF+++D +T + A+ L DR FG+GAD ++ G D+ RIFN G E E CGNG RCFARF+ + Sbjct: 3 LHFTKMQGAGNDFVVLD---ATRAPLALSAADYRFLGDRRFGVGADQILVVERSTTPGVDFRYRIFNGGSGDEVEQCGNGARCFARFVRD 89
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BUCBP (Diaminopimelate epimerase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=dapF PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11 Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDFI+++ +T + L +R GIG D ++ N D+ RIFN++G+E CGNG RCFA F+ L+ L K++ V T Sbjct: 12 IKFSKMHGLGNDFIIINAMMQKTFPVTSNIIQNLSNRYTGIGFDQLLLVENSKNVNIDFHYRIFNANGTEVSQCGNGARCFALFVL-LKKLTKKRTLYVST 111 The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bpback to top |