FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RICRS (Diaminopimelate epimerase OS=Rickettsia rickettsii (strain Sheila Smith) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.367e-11
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            ++FVK HGLGNDF++V+ R+ +      + A+ + +R+ GIG D   F +   +   Y M I+N DGS  ++CGN  RC A+ I  L+   GKQ  TV
Sbjct:    5 INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQ--FILYEEHNDFYEMIIYNIDGSSAKLCGNATRCLAKLI-YLD--TGKQDITV 97          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RICRO (Diaminopimelate epimerase OS=Rickettsia rickettsii (strain Iowa) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.367e-11
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            ++FVK HGLGNDF++V+ R+ +      + A+ + +R+ GIG D   F +   +   Y M I+N DGS  ++CGN  RC A+ I  L+   GKQ  TV
Sbjct:    5 INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQ--FILYEEHNDFYEMIIYNIDGSSAKLCGNATRCLAKLI-YLD--TGKQDITV 97          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LISMH (Diaminopimelate epimerase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.367e-11
Identity = 40/92 (43.48%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIG-ADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            +HF K HG  NDF LVD   +     + EQ    A KLCDR   +G ADG+++       G    MR+ NSDGS   MCGNG+R  AR++ E
Sbjct:    4 IHFTKVHGSQNDFFLVDEEENLITEWSDEQRADFAIKLCDRKHSLGGADGILYVTKSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLE 95          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RICPU (Diaminopimelate epimerase OS=Rickettsia peacockii (strain Rustic) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            ++FVK HGLGNDF++V+ R+ +      + A+ + +R+ GIG D   F +   +   Y M I+N DGS  ++CGN  RC A+ I  L+   GKQ  TV
Sbjct:    5 INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQ--FIIYEEHNDFYEMIIYNIDGSSAKLCGNATRCLAKLI-YLD--TGKQDITV 97          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RICCN (Diaminopimelate epimerase OS=Rickettsia conorii GN=dapF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            ++FVK HGLGNDF++V+ R+ +      + A+ + +R+ GIG D   F +   +   Y M I+N DGS  ++CGN  RC A+ I  L+   GKQ  TV
Sbjct:    5 INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQ--FIIYEEHNDFYEMIIYNIDGSSAKLCGNATRCLAKLI-YLD--TGKQDITV 97          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RICAE (Diaminopimelate epimerase OS=Rickettsia africae (strain ESF-5) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            ++FVK HGLGNDF++V+ R+ +      + A+ + +R+ GIG D   F +   +   Y M I+N DGS  ++CGN  RC A+ I  L+   GKQ  TV
Sbjct:    5 INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQ--FIIYEEHNDFYEMIIYNIDGSSAKLCGNATRCLAKLI-YLD--TGKQDITV 97          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RICTY (Diaminopimelate epimerase OS=Rickettsia typhi GN=dapF PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            ++FVK HGLGNDF++V  R+        + A+ + DR+ GIG D  I      N   YTM I+N DGS  ++CGN  RC A+ I
Sbjct:    5 INFVKMHGLGNDFVIVHKRDLATVCNLSQLAKNMADRHTGIGCDQCIIYEEYNN--VYTMIIYNIDGSNAKLCGNATRCLAKLI 86          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_COREF (Diaminopimelate epimerase OS=Corynebacterium efficiens GN=dapF PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAM---------PGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K H   NDFI++ + + T   +T ++  +LCDR  G+GADGV+  +         PGV+   + M   N+DGS  EMCGNGVR FA ++A    L     FT+ T
Sbjct:    7 FAKGHATENDFIIIHDPDGTID-LTADEVTRLCDRRAGLGADGVLRVVRAGELGVQTPGVDPGWWFMDYRNADGSLAEMCGNGVRVFAHWLA-AHQLVDTTDFTIGT 111          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RICFE (Diaminopimelate epimerase OS=Rickettsia felis GN=dapF PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            ++FVK HGLGNDF++V+ R+ +      + A+ + DR+ GIG D   F +   +   Y M I+N DGS  ++CGN  RC A+ I
Sbjct:    5 INFVKMHGLGNDFVVVNKRDLSSSYDLSQLAKNMADRHTGIGCDQ--FIIYEEHDDFYEMIIYNIDGSSAKLCGNATRCLAKLI 86          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RICAH (Diaminopimelate epimerase OS=Rickettsia akari (strain Hartford) GN=dapF PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            ++FVK HGLGNDF++V+ R+        + A+ + DR+ GIG D   F +   +   Y M I+N DGS  ++CGN  RC A+ I
Sbjct:    5 INFVKMHGLGNDFVIVNKRDLLSSYDLSQLAKNMADRHTGIGCDQ--FIIYEEHNDFYEMIIYNIDGSSAKLCGNATRCLAKLI 86          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_RICRS1.367e-1139.80Diaminopimelate epimerase OS=Rickettsia rickettsii... [more]
DAPF_RICRO1.367e-1139.80Diaminopimelate epimerase OS=Rickettsia rickettsii... [more]
DAPF_LISMH1.367e-1143.48Diaminopimelate epimerase OS=Listeria monocytogene... [more]
DAPF_RICPU1.786e-1139.80Diaminopimelate epimerase OS=Rickettsia peacockii ... [more]
DAPF_RICCN1.786e-1139.80Diaminopimelate epimerase OS=Rickettsia conorii GN... [more]
DAPF_RICAE1.786e-1139.80Diaminopimelate epimerase OS=Rickettsia africae (s... [more]
DAPF_RICTY2.332e-1142.86Diaminopimelate epimerase OS=Rickettsia typhi GN=d... [more]
DAPF_COREF2.332e-1139.25Diaminopimelate epimerase OS=Corynebacterium effic... [more]
DAPF_RICFE3.046e-1140.48Diaminopimelate epimerase OS=Rickettsia felis GN=d... [more]
DAPF_RICAH3.046e-1140.48Diaminopimelate epimerase OS=Rickettsia akari (str... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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