FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:92..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACV8 (Diaminopimelate epimerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITP-EQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K  G GND+I V+  +S  P   P + A K    + GIGADG++  +      D++MRIFN+DGSE  MCGN  RC  +++ E + L  K+  T+ T
Sbjct:    5 IKFTKMQGTGNDYIYVNTLSS--PLQDPIKAARKWSTYHTGIGADGLVL-IGASEKADFSMRIFNADGSEAMMCGNASRCIGKYVYE-KGLTDKEVITLET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACA2 (Diaminopimelate epimerase OS=Bacillus amyloliquefaciens (strain FZB42) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11
Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRIT-PEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V+      P     E A K+   + GIG+DG+I   P        MRIFN+DGSE + CGNG+RC A++  E   L  + SF + T
Sbjct:    6 FTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSIHTGIGSDGMILICPSEKAP-VKMRIFNNDGSEGKNCGNGLRCVAKYAYE-HKLTEETSFFIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LISW6 (Diaminopimelate epimerase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 42/95 (44.21%), Postives = 53/95 (55.79%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITP-------EQAEKLCDRNFGIG-ADGVIF-AMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            +HF K HG  NDF LVD     E  IT        + A KLCDR+  +G ADG+++ A     G    MR+ NSDGS   MCGNG+R  AR++ E
Sbjct:    4 IHFTKVHGSQNDFFLVDEE---ENHITAWSDTKRADFAIKLCDRSHSLGGADGILYVAKSNKAGAIGQMRVVNSDGSIASMCGNGLRTVARYLLE 95          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CLAM3 (Diaminopimelate epimerase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 40/98 (40.82%), Postives = 51/98 (52.04%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN------------GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            L F K  G GNDF+L  +  + E  +T  Q + LCDR+FGIGADG I A+                  ++ M   N DGS  EMCGNG+R F  F+ E
Sbjct:    4 LQFTKGQGTGNDFVLFADP-AGEIDLTDTQVQALCDRHFGIGADGTIRAVLSTRIPEGRAALEEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIE 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CAMJ8 (Diaminopimelate epimerase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSF 613
            + F KY   GNDF++  N +  E R     A++LC+R  GIGADG I  +P     D+    +N+DGS   MCGNG R  A F+  +  +N   SF
Sbjct:    1 MKFYKYCASGNDFVIT-NADRKEDRSA--LAKELCNRYEGIGADGFIVILPHEK-YDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSF 92          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RHOE4 (Diaminopimelate epimerase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 43/113 (38.05%), Postives = 58/113 (51.33%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADG--------------VIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            + F K HG  NDF+++ + +     + P +   LCDR  G+GADG              V+ A+P GV   D+ M   NSDGS  EMCGNGVR FA ++ +   L  K  F V
Sbjct:    4 MDFSKGHGTQNDFVVLPDLD-VRVDLEPARVSALCDRQRGLGADGILRVARAGALADAGVLGALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYL-KASGLESKDEFVV 114          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CORGB (Diaminopimelate epimerase OS=Corynebacterium glutamicum (strain R) GN=dapF PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPG-------VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K H   NDFI++ + ++    +TPE   KLCDR  GIGADG++  +         V+ + + M   N+DGS  EMCGNGVR FA ++    +L    SF + T
Sbjct:    7 FAKGHATENDFIIIPDEDARLD-LTPEMVVKLCDRRAGIGADGILRVVKAADVEGSTVDPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYS-RSLVDNTSFDIGT 109          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BRAJA (Diaminopimelate epimerase OS=Bradyrhizobium japonicum GN=dapF PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGV-IFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            F K +G+GN+ ++VD R+ST  ++TP+ A  +     G+  D + +   P ++GT+  + I+N+DGSE   CGNG+RC  R I E
Sbjct:    9 FAKMNGIGNEIVVVDMRDSTA-KVTPDDARAVASAQGGVPYDQLMVLQKPRLDGTEAFISIYNNDGSEAGACGNGMRCVVRRIFE 92          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_BACV85.195e-1139.60Diaminopimelate epimerase OS=Bacteroides vulgatus ... [more]
DAPF_BACA25.195e-1141.41Diaminopimelate epimerase OS=Bacillus amyloliquefa... [more]
DAPF_LISW66.785e-1144.21Diaminopimelate epimerase OS=Listeria welshimeri s... [more]
DAPF_CLAM36.785e-1140.82Diaminopimelate epimerase OS=Clavibacter michigane... [more]
DAPF_CAMJ86.785e-1139.58Diaminopimelate epimerase OS=Campylobacter jejuni ... [more]
DAPF_RHOE48.862e-1138.05Diaminopimelate epimerase OS=Rhodococcus erythropo... [more]
DAPF_CORGB8.862e-1139.05Diaminopimelate epimerase OS=Corynebacterium gluta... [more]
DAPF_BRAJA8.862e-1138.82Diaminopimelate epimerase OS=Bradyrhizobium japoni... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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