FC876448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACV8 (Diaminopimelate epimerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dapF PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11 Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITP-EQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K G GND+I V+ +S P P + A K + GIGADG++ + D++MRIFN+DGSE MCGN RC +++ E + L K+ T+ T Sbjct: 5 IKFTKMQGTGNDYIYVNTLSS--PLQDPIKAARKWSTYHTGIGADGLVL-IGASEKADFSMRIFNADGSEAMMCGNASRCIGKYVYE-KGLTDKEVITLET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACA2 (Diaminopimelate epimerase OS=Bacillus amyloliquefaciens (strain FZB42) GN=dapF PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11 Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDNRNSTEPRIT-PEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 F K HGLGN +I V+ P E A K+ + GIG+DG+I P MRIFN+DGSE + CGNG+RC A++ E L + SF + T Sbjct: 6 FTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSIHTGIGSDGMILICPSEKAP-VKMRIFNNDGSEGKNCGNGLRCVAKYAYE-HKLTEETSFFIET 102
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LISW6 (Diaminopimelate epimerase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dapF PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11 Identity = 42/95 (44.21%), Postives = 53/95 (55.79%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITP-------EQAEKLCDRNFGIG-ADGVIF-AMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 +HF K HG NDF LVD E IT + A KLCDR+ +G ADG+++ A G MR+ NSDGS MCGNG+R AR++ E Sbjct: 4 IHFTKVHGSQNDFFLVDEE---ENHITAWSDTKRADFAIKLCDRSHSLGGADGILYVAKSNKAGAIGQMRVVNSDGSIASMCGNGLRTVARYLLE 95
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CLAM3 (Diaminopimelate epimerase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=dapF PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11 Identity = 40/98 (40.82%), Postives = 51/98 (52.04%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN------------GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 L F K G GNDF+L + + E +T Q + LCDR+FGIGADG I A+ ++ M N DGS EMCGNG+R F F+ E Sbjct: 4 LQFTKGQGTGNDFVLFADP-AGEIDLTDTQVQALCDRHFGIGADGTIRAVLSTRIPEGRAALEEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIE 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CAMJ8 (Diaminopimelate epimerase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=dapF PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11 Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSF 613 + F KY GNDF++ N + E R A++LC+R GIGADG I +P D+ +N+DGS MCGNG R A F+ + +N SF Sbjct: 1 MKFYKYCASGNDFVIT-NADRKEDRSA--LAKELCNRYEGIGADGFIVILPHEK-YDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSF 92
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RHOE4 (Diaminopimelate epimerase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=dapF PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11 Identity = 43/113 (38.05%), Postives = 58/113 (51.33%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADG--------------VIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619 + F K HG NDF+++ + + + P + LCDR G+GADG V+ A+P GV D+ M NSDGS EMCGNGVR FA ++ + L K F V Sbjct: 4 MDFSKGHGTQNDFVVLPDLD-VRVDLEPARVSALCDRQRGLGADGILRVARAGALADAGVLGALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYL-KASGLESKDEFVV 114
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CORGB (Diaminopimelate epimerase OS=Corynebacterium glutamicum (strain R) GN=dapF PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11 Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPG-------VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 F K H NDFI++ + ++ +TPE KLCDR GIGADG++ + V+ + + M N+DGS EMCGNGVR FA ++ +L SF + T Sbjct: 7 FAKGHATENDFIIIPDEDARLD-LTPEMVVKLCDRRAGIGADGILRVVKAADVEGSTVDPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYS-RSLVDNTSFDIGT 109
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BRAJA (Diaminopimelate epimerase OS=Bradyrhizobium japonicum GN=dapF PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11 Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGV-IFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 F K +G+GN+ ++VD R+ST ++TP+ A + G+ D + + P ++GT+ + I+N+DGSE CGNG+RC R I E Sbjct: 9 FAKMNGIGNEIVVVDMRDSTA-KVTPDDARAVASAQGGVPYDQLMVLQKPRLDGTEAFISIYNNDGSEAGACGNGMRCVVRRIFE 92 The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bpback to top |