FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:92..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURVG (Diaminopimelate epimerase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=dapF PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADG-VIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D  + T P +T  Q   L DR+FGIGAD  ++   P V+G D+  RIFN DG E E CGNG RCF +F+ +   L  K+S  V
Sbjct:    3 LSFTKMHGAGNDFVVLDGYSHTLPPLTDVQVRALADRHFGIGADQLLVVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVTD-RGLTDKRSVRV 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBA (Diaminopimelate epimerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dapF PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            ++F K  G+GND++ +D     + R++PEQ +KL DRNFGIG DGVIF +   N  ++ M ++NSDGS  EMCGNGVRC  +F+ +   L   Q  T+ T
Sbjct:    3 INFTKMEGIGNDYVYID-ATKNDIRLSPEQIQKLSDRNFGIGGDGVIF-IRNSNSGEFQMDMYNSDGSSSEMCGNGVRCVGKFVYD-HGLTKNQKPTIET 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURPS (Diaminopimelate epimerase OS=Burkholderia pseudomallei GN=dapF PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L GK S  V
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTGKASVRV 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURP6 (Diaminopimelate epimerase OS=Burkholderia pseudomallei (strain 668) GN=dapF PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L GK S  V
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTGKASVRV 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURP0 (Diaminopimelate epimerase OS=Burkholderia pseudomallei (strain 1106a) GN=dapF PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L GK S  V
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTGKASVRV 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURMS (Diaminopimelate epimerase OS=Burkholderia mallei (strain SAVP1) GN=dapF PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L GK S  V
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTGKASVRV 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURMA (Diaminopimelate epimerase OS=Burkholderia mallei GN=dapF PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L GK S  V
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTGKASVRV 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURM9 (Diaminopimelate epimerase OS=Burkholderia mallei (strain NCTC 10229) GN=dapF PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L GK S  V
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTGKASVRV 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURM7 (Diaminopimelate epimerase OS=Burkholderia mallei (strain NCTC 10247) GN=dapF PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L GK S  V
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTGKASVRV 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SACD2 (Diaminopimelate epimerase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dapF PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19
Identity = 50/101 (49.50%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    ITPE+A +L DR+FG+G D V+    P     D+  RIFN DGSE E CGNG RCFA F+ +   L  K   TV T
Sbjct:    3 LRFTKMHGLGNDFVMID-AISQRVTITPERARQLADRHFGVGCDQVLVVETPDSPDADFKYRIFNHDGSEVENCGNGARCFAVFVRQ-RGLTAKSVITVET 101          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_BURVG5.183e-1947.47Diaminopimelate epimerase OS=Burkholderia vietnami... [more]
DAPF_LEPBA6.770e-1946.00Diaminopimelate epimerase OS=Leptospira biflexa se... [more]
DAPF_BURPS6.770e-1947.47Diaminopimelate epimerase OS=Burkholderia pseudoma... [more]
DAPF_BURP66.770e-1947.47Diaminopimelate epimerase OS=Burkholderia pseudoma... [more]
DAPF_BURP06.770e-1947.47Diaminopimelate epimerase OS=Burkholderia pseudoma... [more]
DAPF_BURMS6.770e-1947.47Diaminopimelate epimerase OS=Burkholderia mallei (... [more]
DAPF_BURMA6.770e-1947.47Diaminopimelate epimerase OS=Burkholderia mallei G... [more]
DAPF_BURM96.770e-1947.47Diaminopimelate epimerase OS=Burkholderia mallei (... [more]
DAPF_BURM76.770e-1947.47Diaminopimelate epimerase OS=Burkholderia mallei (... [more]
DAPF_SACD28.841e-1949.50Diaminopimelate epimerase OS=Saccharophagus degrad... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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