FC876448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_META3 (Diaminopimelate epimerase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=dapF PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19 Identity = 49/90 (54.44%), Postives = 60/90 (66.67%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAE---KLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 L+F K HGLGND+I++ N E E+AE K+C R F IGADGVIF P + D RIFNSDGSE EMCGNG+RCF++F+ E Sbjct: 3 LNFTKMHGLGNDYIVI-NEFDGEKIKEDEKAEFSKKICKRGFSIGADGVIFVQPATDEKYDIRFRIFNSDGSEAEMCGNGIRCFSKFVYE 91
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEFN (Diaminopimelate epimerase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dapF PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.508e-18 Identity = 49/101 (48.51%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 +HF K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DGSE E CGNG RCFARF+ + L K V T Sbjct: 2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTQKNKIRVST 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEAM (Diaminopimelate epimerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dapF PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.508e-18 Identity = 49/101 (48.51%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 +HF K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DGSE E CGNG RCFARF+ + L K V T Sbjct: 2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTQKHKIKVST 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HALOH (Diaminopimelate epimerase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dapF PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.970e-18 Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HG GNDFI+V+ N + + + A +LC R+F IGADG+I +P + D+ MRIFN+DGSE EMCGNG+RCFA ++ E NL + + T Sbjct: 3 LSFTKMHGTGNDFIMVNGSNYPDLDFS-KLARQLCRRHFSIGADGLIIVLPPESVEHDFRMRIFNADGSEAEMCGNGIRCFAHYLRE-NNLTTRDVLKIET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEWM (Diaminopimelate epimerase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dapF PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.572e-18 Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 +HF K HGLGNDF++VD +PEQ ++L DRNFG+G D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L K V T Sbjct: 2 IHFAKMHGLGNDFMVVDGVTQNV-FFSPEQIKRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVEQCGNGARCFARFVRN-KGLTNKHKIKVST 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_AZOSE (Diaminopimelate epimerase OS=Azoarcus sp. (strain EbN1) GN=dapF PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.572e-18 Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D R S + +TPEQ +L DR+FGIG D ++ D+ RIFN+DG E E CGNG RCF RF+ E + L K+ V T Sbjct: 3 LRFTKMHGLGNDFVVIDAIRQSVD--LTPEQVRRLADRHFGIGCDQLLVVEEATRPDVDFRYRIFNADGGEVEQCGNGARCFVRFVHE-QGLTAKRRIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METTH (Diaminopimelate epimerase OS=Methanobacterium thermoautotrophicum GN=dapF PE=3 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18 Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDN--RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577 F K HGLGND++++D + PE ++C R F +GADGVIF P D RIFN+DGSE EMCGNG+RCF++F+ Sbjct: 4 FSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPASGEGDIRFRIFNADGSEAEMCGNGIRCFSKFV 87
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURCM (Diaminopimelate epimerase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dapF PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18 Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619 L F K HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+ RIFN DG E E CGNG RCF +F+++ L K+S V Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRV 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ALCBS (Diaminopimelate epimerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=dapF PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18 Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPR----ITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D + P + ++ +L DR FG+G D ++ P D+ RI N+DGSE CGNG RCFARF+ E + L K+S V T Sbjct: 3 LRFTKMHGLGNDFMVIDGIRQSLPETGLPLPADEIRRLADRKFGVGFDQMLIVQPAQGDADFRYRILNADGSEVSQCGNGARCFARFVRE-QGLTDKKSIRVET 105
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_NITEC (Diaminopimelate epimerase OS=Nitrosomonas eutropha (strain C91) GN=dapF PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18 Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDFI+++ N+ ++ + P +L DR+FGIG D ++ G D+ RIFN+DG E E CGNG RCFARF+ + NL K + V T Sbjct: 3 LQFTKMHGLGNDFIVINAINQPASLTFLDPATIRRLADRHFGIGFDQLLIVEQAREGGDFRYRIFNADGGEVEQCGNGARCFARFVRDY-NLTDKNTIRVET 103 The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bpback to top |