FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:92..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LARHH (Diaminopimelate epimerase OS=Laribacter hongkongensis (strain HLHK9) GN=dapF PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18
Identity = 49/101 (48.51%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K  GLGNDF ++D    T  R+TPEQ  KL DR FGIG D ++   P  + G D++ RIFN DG E E CGNG RCFARF+ +   L  ++   V T
Sbjct:    3 LKFTKMQGLGNDFAVLDGVRQTI-RLTPEQIRKLGDRRFGIGFDQLLLVEPPQDAGNDFSYRIFNCDGGEVEQCGNGARCFARFVFD-HGLTDRREIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_DESAP (Diaminopimelate epimerase OS=Desulforudis audaxviator (strain MP104C) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.731e-18
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++V+    + P      A ++CDR  G+GADG++  +P     D  MR+FN DGSEPEMCGN +RC A + A    L  K    V T
Sbjct:    1 MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVLLLPSA-AADLRMRVFNPDGSEPEMCGNAIRCVALY-ARRRGLVAKTQLEVET 98          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHESW (Diaminopimelate epimerase OS=Shewanella sp. (strain W3-18-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 48/101 (47.52%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTNKNKIRVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEPC (Diaminopimelate epimerase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 48/101 (47.52%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTNKNKIRVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEDO (Diaminopimelate epimerase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            +HF K HGLGNDF++VD         +PEQ  +L +RNFG+G D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLANRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTQKNKIRVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBY (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AYE) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF++VD   S    +     ++L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBT (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dapF PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF++VD   S    +     ++L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBS (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain SDF) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF++VD   S    +     ++L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBC (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain ACICU) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF++VD   S    +     ++L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACIB5 (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AB0057) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF++VD   S    +     ++L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQT 101          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_LARHH4.388e-1848.51Diaminopimelate epimerase OS=Laribacter hongkongen... [more]
DAPF_DESAP5.731e-1844.00Diaminopimelate epimerase OS=Desulforudis audaxvia... [more]
DAPF_SHESW7.485e-1847.52Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHEPC7.485e-1847.52Diaminopimelate epimerase OS=Shewanella putrefacie... [more]
DAPF_SHEDO7.485e-1846.53Diaminopimelate epimerase OS=Shewanella denitrific... [more]
DAPF_ACIBY7.485e-1848.51Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIBT7.485e-1848.51Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIBS7.485e-1848.51Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIBC7.485e-1848.51Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIB57.485e-1848.51Diaminopimelate epimerase OS=Acinetobacter baumann... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
back to top