FC876448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACIB3 (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AB307-0294) GN=dapF PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18 Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF++VD S + ++L DR+FG+G D ++ P V D+ RIFN+DGSE E CGNGVRCFARF+ E +L K + TV T Sbjct: 3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQT 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_NITMU (Diaminopimelate epimerase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dapF PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18 Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDFI++D N + ++PEQ +L DR+ G+G D ++ D+ RIFN+DG E E CGNG RCF R++ + + KQ + T Sbjct: 3 LKFTKMHGLGNDFIVIDAVNQ-QISLSPEQLRRLADRHLGVGCDQILLIEKAEGDADFRYRIFNADGGEVEQCGNGARCFVRYVHD-HGMTDKQQVRIET 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_FLAPJ (Diaminopimelate epimerase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=dapF PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18 Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 2 Query: 338 KYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSF 613 KY G GNDFI++DNR P+ +KLCDR FGIGADG+I + TD+ M +NSDG++ MCGNG RC F +L + K +F Sbjct: 5 KYQGTGNDFIMIDNRLQIFPKQNTALIQKLCDRRFGIGADGLIL-LENDQSTDFKMVYYNSDGNQSTMCGNGGRCLVAFAKKLNIIKNKTTF 95
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METTP (Diaminopimelate epimerase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=dapF PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17 Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTE-PRITPEQAEK-LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFAR 571 L FVK HG GNDFIL+D N P +A + LC RNFGIG DGV+F +P D MR+F DGSE EMCGNG+RC A+ Sbjct: 4 LEFVKLHGNGNDFILIDELNGERIPEDEKSEASRILCHRNFGIGGDGVLFLVPSERA-DIGMRLFQPDGSEAEMCGNGIRCLAK 86
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_UNCMA (Diaminopimelate epimerase OS=Uncultured methanogenic archaeon RC-I GN=dapF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17 Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN 598 + F K HG GNDFI++D + P A+K+C R FGIGADGV+F ++ T MRIFN DGSE EMCGNG+RCF ++ + ++N Sbjct: 4 IKFTKMHGNGNDFIVIDEFENPVPEEKKAAFAKKVCHRRFGIGADGVLFLAKPLH-TSLHMRIFNEDGSEAEMCGNGIRCFVKYAVDNGHMN 94
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB9 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS195) GN=dapF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17 Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG+E E CGNG RCFARF+ + L K V T Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVST 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB8 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS185) GN=dapF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17 Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG+E E CGNG RCFARF+ + L K V T Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVST 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB5 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dapF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17 Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG+E E CGNG RCFARF+ + L K V T Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVST 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB2 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS223) GN=dapF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17 Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG+E E CGNG RCFARF+ + L K V T Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVST 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURXL (Diaminopimelate epimerase OS=Burkholderia xenovorans (strain LB400) GN=dapF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17 Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 L F K HG GNDF+++D T+P +TP Q L DR+FG+GAD ++ P V G D+ RIFN DG E E CGNG RCF +F+ E Sbjct: 3 LKFTKMHGAGNDFVVLDGY--TQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRE 88 The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bpback to top |