FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:92..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACIB3 (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AB307-0294) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF++VD   S    +     ++L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_NITMU (Diaminopimelate epimerase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDFI++D  N  +  ++PEQ  +L DR+ G+G D ++         D+  RIFN+DG E E CGNG RCF R++ +   +  KQ   + T
Sbjct:    3 LKFTKMHGLGNDFIVIDAVNQ-QISLSPEQLRRLADRHLGVGCDQILLIEKAEGDADFRYRIFNADGGEVEQCGNGARCFVRYVHD-HGMTDKQQVRIET 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_FLAPJ (Diaminopimelate epimerase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=dapF PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  338 KYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSF 613
            KY G GNDFI++DNR    P+      +KLCDR FGIGADG+I  +     TD+ M  +NSDG++  MCGNG RC   F  +L  +  K +F
Sbjct:    5 KYQGTGNDFIMIDNRLQIFPKQNTALIQKLCDRRFGIGADGLIL-LENDQSTDFKMVYYNSDGNQSTMCGNGGRCLVAFAKKLNIIKNKTTF 95          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METTP (Diaminopimelate epimerase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=dapF PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTE-PRITPEQAEK-LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFAR 571
            L FVK HG GNDFIL+D  N    P     +A + LC RNFGIG DGV+F +P     D  MR+F  DGSE EMCGNG+RC A+
Sbjct:    4 LEFVKLHGNGNDFILIDELNGERIPEDEKSEASRILCHRNFGIGGDGVLFLVPSERA-DIGMRLFQPDGSEAEMCGNGIRCLAK 86          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_UNCMA (Diaminopimelate epimerase OS=Uncultured methanogenic archaeon RC-I GN=dapF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN 598
            + F K HG GNDFI++D   +  P       A+K+C R FGIGADGV+F    ++ T   MRIFN DGSE EMCGNG+RCF ++  +  ++N
Sbjct:    4 IKFTKMHGNGNDFIVIDEFENPVPEEKKAAFAKKVCHRRFGIGADGVLFLAKPLH-TSLHMRIFNEDGSEAEMCGNGIRCFVKYAVDNGHMN 94          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB9 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS195) GN=dapF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB8 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS185) GN=dapF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB5 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dapF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB2 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS223) GN=dapF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURXL (Diaminopimelate epimerase OS=Burkholderia xenovorans (strain LB400) GN=dapF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            L F K HG GNDF+++D    T+P  +TP Q   L DR+FG+GAD ++    P V G D+  RIFN DG E E CGNG RCF +F+ E
Sbjct:    3 LKFTKMHGAGNDFVVLDGY--TQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRE 88          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_ACIB37.485e-1848.51Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_NITMU9.775e-1842.00Diaminopimelate epimerase OS=Nitrosospira multifor... [more]
DAPF_FLAPJ9.775e-1846.74Diaminopimelate epimerase OS=Flavobacterium psychr... [more]
DAPF_METTP1.277e-1754.76Diaminopimelate epimerase OS=Methanosaeta thermoph... [more]
DAPF_UNCMA1.667e-1747.83Diaminopimelate epimerase OS=Uncultured methanogen... [more]
DAPF_SHEB91.667e-1746.53Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_SHEB81.667e-1746.53Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_SHEB51.667e-1746.53Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_SHEB21.667e-1746.53Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_BURXL1.667e-1750.00Diaminopimelate epimerase OS=Burkholderia xenovora... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
back to top