FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:92..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEHT (Diaminopimelate epimerase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dapF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            ++F K HGLGNDF+++DN       ++ +Q  KL DR+FGIG D ++    P     D+  RIFN+DG+E E CGNG RCFARF+  ++ L  K   TV T
Sbjct:    3 VNFSKMHGLGNDFVVIDNITQNV-FLSRDQIIKLADRHFGIGFDQLLMVEAPYSPDLDFHYRIFNADGTEVEQCGNGARCFARFV-RMKGLTNKHKITVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_IDILO (Diaminopimelate epimerase OS=Idiomarina loihiensis GN=dapF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            LHF K HGLGNDF++VDN       + P+Q  +  DR+ GIG D ++   P  +   D+  RIFN+DGSE   CGNG RCFA+F+ + +NL+ K    V T
Sbjct:    3 LHFSKMHGLGNDFMVVDNVTQNL-YVNPDQIRRWADRHTGIGFDQMLLVEPPYDPDLDFHYRIFNADGSEVAQCGNGARCFAKFV-KAKNLSNKNHLKVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_DECAR (Diaminopimelate epimerase OS=Dechloromonas aromatica (strain RCB) GN=dapF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17
Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D  R S    ++PEQ   L DR+FG+G D ++        G D+  RIFN+DG E E CGNG RCF RF+ + E L  K+   V T
Sbjct:    3 LKFSKMHGLGNDFVVLDGVRQSVS--LSPEQLCYLADRHFGVGCDQILLVEKASQPGIDFRYRIFNADGGEVEQCGNGARCFVRFVHD-EGLTDKREIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ARCFU (Diaminopimelate epimerase OS=Archaeoglobus fulgidus GN=dapF PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNST--EPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            F K HG GNDF+L+D            P     +C RNFG+GADG +F  P     D   R FNSDGSE  MCGNG+RCF+R++ E
Sbjct:    5 FTKMHGNGNDFVLIDEFEGVIVGEEEKPRFVRAVCHRNFGVGADGALFVQPSQKA-DVRFRYFNSDGSEAAMCGNGIRCFSRYVVE 89          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ALKMQ (Diaminopimelate epimerase OS=Alkaliphilus metalliredigens (strain QYMF) GN=dapF PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HG GNDFI++   +    +   + A+++C R+FGIGADG++      +  D  M+ FNSDGSE  MCGNG+RCFA+F+ + E L  K+ FTV T
Sbjct:    3 IKFKKMHGTGNDFIMIYYEDYPFEQHFNQLAKEVCHRHFGIGADGLMIVKES-SVADVQMKYFNSDGSEAGMCGNGIRCFAKFVYD-EGLVKKEIFTVET 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_MAGSM (Diaminopimelate epimerase OS=Magnetococcus sp. (strain MC-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            F+K HGLGNDF+++D+  S    ++P++A    DR  G+G D V+  +PGV G D  MRI+N DGS  EMCGN +RC   ++ E
Sbjct:    5 FIKMHGLGNDFVVLDHLESPR-ELSPQEARFWADRRRGVGCDQVVQLLPGVEGGDAQMRIYNPDGSRAEMCGNAMRCVGLYLHE 87          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CLOTH (Diaminopimelate epimerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dapF PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGND+I V+    T    + E A+K+ DR+FGIG+DG++  MP     D+ MR+FNSDGSE EMCGN +RC  +++ +   +  K    V T
Sbjct:    1 MRFTKMHGLGNDYIYVNCFEETVENPS-EVAKKVSDRHFGIGSDGLVLIMPSERA-DFKMRMFNSDGSEAEMCGNAIRCVGKYVFD-RGMTNKNVIRVET 97          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA6 (Diaminopimelate epimerase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dapF PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.412e-16
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++DN        + E+  +L DRNFGIG D ++   P  +   D+  RIFNSDGSE   CGNG RCFARF+ +++ L  +    V T
Sbjct:    3 VQFSKMHGLGNDFVVIDNVTQNV-FFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDFHYRIFNSDGSEVSQCGNGARCFARFV-KMKGLTNRNKIVVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_NITEU (Diaminopimelate epimerase OS=Nitrosomonas europaea GN=dapF PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.412e-16
Identity = 47/101 (46.53%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDFI++D  N +   + P    +  DR+FGIG D ++    PG +G D+  RIFN+DG E E CGNG RCFARF+ +  +L  K +  V T
Sbjct:    3 LKFTKMHGLGNDFIVIDAINQSVS-LDPATIRRWADRHFGIGFDQLLVVEKPGESG-DFRYRIFNADGGEVEQCGNGARCFARFVRD-HDLTRKNTIRVET 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HERAR (Diaminopimelate epimerase OS=Herminiimonas arsenicoxydans GN=dapF PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.412e-16
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HG GNDF+++D  N +    TP Q + L DR FG+GAD ++    P   G D+  RI+N+DG E E CGNG R F +F+ + + L  KQ+  V T
Sbjct:    3 IKFTKMHGAGNDFVVIDAINQSI-HFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNADGGEVEQCGNGARAFVKFVTD-KKLTDKQAIRVET 101          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_PSEHT6.336e-1745.54Diaminopimelate epimerase OS=Pseudoalteromonas hal... [more]
DAPF_IDILO6.336e-1745.54Diaminopimelate epimerase OS=Idiomarina loihiensis... [more]
DAPF_DECAR6.336e-1746.08Diaminopimelate epimerase OS=Dechloromonas aromati... [more]
DAPF_ARCFU8.275e-1747.67Diaminopimelate epimerase OS=Archaeoglobus fulgidu... [more]
DAPF_ALKMQ8.275e-1745.00Diaminopimelate epimerase OS=Alkaliphilus metallir... [more]
DAPF_MAGSM1.081e-1646.43Diaminopimelate epimerase OS=Magnetococcus sp. (st... [more]
DAPF_CLOTH1.081e-1644.00Diaminopimelate epimerase OS=Clostridium thermocel... [more]
DAPF_PSEA61.412e-1644.55Diaminopimelate epimerase OS=Pseudoalteromonas atl... [more]
DAPF_NITEU1.412e-1646.53Diaminopimelate epimerase OS=Nitrosomonas europaea... [more]
DAPF_HERAR1.412e-1642.57Diaminopimelate epimerase OS=Herminiimonas arsenic... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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