FC876448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEHT (Diaminopimelate epimerase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dapF PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17 Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 ++F K HGLGNDF+++DN ++ +Q KL DR+FGIG D ++ P D+ RIFN+DG+E E CGNG RCFARF+ ++ L K TV T Sbjct: 3 VNFSKMHGLGNDFVVIDNITQNV-FLSRDQIIKLADRHFGIGFDQLLMVEAPYSPDLDFHYRIFNADGTEVEQCGNGARCFARFV-RMKGLTNKHKITVST 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_IDILO (Diaminopimelate epimerase OS=Idiomarina loihiensis GN=dapF PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17 Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 LHF K HGLGNDF++VDN + P+Q + DR+ GIG D ++ P + D+ RIFN+DGSE CGNG RCFA+F+ + +NL+ K V T Sbjct: 3 LHFSKMHGLGNDFMVVDNVTQNL-YVNPDQIRRWADRHTGIGFDQMLLVEPPYDPDLDFHYRIFNADGSEVAQCGNGARCFAKFV-KAKNLSNKNHLKVST 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_DECAR (Diaminopimelate epimerase OS=Dechloromonas aromatica (strain RCB) GN=dapF PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17 Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D R S ++PEQ L DR+FG+G D ++ G D+ RIFN+DG E E CGNG RCF RF+ + E L K+ V T Sbjct: 3 LKFSKMHGLGNDFVVLDGVRQSVS--LSPEQLCYLADRHFGVGCDQILLVEKASQPGIDFRYRIFNADGGEVEQCGNGARCFVRFVHD-EGLTDKREIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ARCFU (Diaminopimelate epimerase OS=Archaeoglobus fulgidus GN=dapF PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17 Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDNRNST--EPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 F K HG GNDF+L+D P +C RNFG+GADG +F P D R FNSDGSE MCGNG+RCF+R++ E Sbjct: 5 FTKMHGNGNDFVLIDEFEGVIVGEEEKPRFVRAVCHRNFGVGADGALFVQPSQKA-DVRFRYFNSDGSEAAMCGNGIRCFSRYVVE 89
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ALKMQ (Diaminopimelate epimerase OS=Alkaliphilus metalliredigens (strain QYMF) GN=dapF PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17 Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HG GNDFI++ + + + A+++C R+FGIGADG++ + D M+ FNSDGSE MCGNG+RCFA+F+ + E L K+ FTV T Sbjct: 3 IKFKKMHGTGNDFIMIYYEDYPFEQHFNQLAKEVCHRHFGIGADGLMIVKES-SVADVQMKYFNSDGSEAGMCGNGIRCFAKFVYD-EGLVKKEIFTVET 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_MAGSM (Diaminopimelate epimerase OS=Magnetococcus sp. (strain MC-1) GN=dapF PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16 Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 F+K HGLGNDF+++D+ S ++P++A DR G+G D V+ +PGV G D MRI+N DGS EMCGN +RC ++ E Sbjct: 5 FIKMHGLGNDFVVLDHLESPR-ELSPQEARFWADRRRGVGCDQVVQLLPGVEGGDAQMRIYNPDGSRAEMCGNAMRCVGLYLHE 87
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CLOTH (Diaminopimelate epimerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dapF PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16 Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGND+I V+ T + E A+K+ DR+FGIG+DG++ MP D+ MR+FNSDGSE EMCGN +RC +++ + + K V T Sbjct: 1 MRFTKMHGLGNDYIYVNCFEETVENPS-EVAKKVSDRHFGIGSDGLVLIMPSERA-DFKMRMFNSDGSEAEMCGNAIRCVGKYVFD-RGMTNKNVIRVET 97
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA6 (Diaminopimelate epimerase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dapF PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.412e-16 Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF+++DN + E+ +L DRNFGIG D ++ P + D+ RIFNSDGSE CGNG RCFARF+ +++ L + V T Sbjct: 3 VQFSKMHGLGNDFVVIDNVTQNV-FFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDFHYRIFNSDGSEVSQCGNGARCFARFV-KMKGLTNRNKIVVST 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_NITEU (Diaminopimelate epimerase OS=Nitrosomonas europaea GN=dapF PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.412e-16 Identity = 47/101 (46.53%), Postives = 62/101 (61.39%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDFI++D N + + P + DR+FGIG D ++ PG +G D+ RIFN+DG E E CGNG RCFARF+ + +L K + V T Sbjct: 3 LKFTKMHGLGNDFIVIDAINQSVS-LDPATIRRWADRHFGIGFDQLLVVEKPGESG-DFRYRIFNADGGEVEQCGNGARCFARFVRD-HDLTRKNTIRVET 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HERAR (Diaminopimelate epimerase OS=Herminiimonas arsenicoxydans GN=dapF PE=3 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 1.412e-16 Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HG GNDF+++D N + TP Q + L DR FG+GAD ++ P G D+ RI+N+DG E E CGNG R F +F+ + + L KQ+ V T Sbjct: 3 IKFTKMHGAGNDFVVIDAINQSI-HFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNADGGEVEQCGNGARAFVKFVTD-KKLTDKQAIRVET 101 The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bpback to top |