FC876454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_MAIZE (50S ribosomal protein L2, chloroplastic OS=Zea mays GN=rpl2-A PE=2 SV=2) HSP 1 Score: 243.432 bits (620), Expect = 1.309e-63 Identity = 115/131 (87.79%), Postives = 121/131 (92.37%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MA HLYKT PSTR G VD QVKSNPRN LI+G+HRCGKGRNARGIITA HRGGGHKRLYRKIDFRRN+KDI GRI+TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+ Sbjct: 1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNKLIHGRHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNQKDISGRIITIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_EPIVI (50S ribosomal protein L2, plastid OS=Epifagus virginiana GN=rpl2-A PE=3 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 2.917e-63 Identity = 115/131 (87.79%), Postives = 120/131 (91.60%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAIHLYKTSTPSTRNG V SQVKSNPR NLIYGQH CGKGRN RGIIT HRGGGHKRLYRKI F RNEK IYGRI+TIEYDPNRNAYICLIHYGDG+KRYILHPRGAIIGDT+VSGTEVPI +GNALPL+ Sbjct: 1 MAIHLYKTSTPSTRNGTVYSQVKSNPRKNLIYGQHHCGKGRNVRGIITTRHRGGGHKRLYRKISFIRNEKYIYGRIITIEYDPNRNAYICLIHYGDGDKRYILHPRGAIIGDTLVSGTEVPIIIGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ORYSJ (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl2-A PE=3 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 3.809e-63 Identity = 114/131 (87.02%), Postives = 121/131 (92.37%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MA HLYKT PSTR G +D QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEK YILHPRGAIIGDTIVSGT+VPI MGNALPL+ Sbjct: 1 MAKHLYKTPIPSTRKGTIDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ORYSI (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. indica GN=rpl2-A PE=3 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 3.809e-63 Identity = 114/131 (87.02%), Postives = 121/131 (92.37%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MA HLYKT PSTR G +D QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEK YILHPRGAIIGDTIVSGT+VPI MGNALPL+ Sbjct: 1 MAKHLYKTPIPSTRKGTIDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ORYSA (50S ribosomal protein L2, chloroplastic OS=Oryza sativa GN=rpl2-A PE=3 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 3.809e-63 Identity = 114/131 (87.02%), Postives = 121/131 (92.37%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MA HLYKT PSTR G +D QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEK YILHPRGAIIGDTIVSGT+VPI MGNALPL+ Sbjct: 1 MAKHLYKTPIPSTRKGTIDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ORYNI (50S ribosomal protein L2, chloroplastic OS=Oryza nivara GN=rpl2-A PE=3 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 3.809e-63 Identity = 114/131 (87.02%), Postives = 121/131 (92.37%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MA HLYKT PSTR G +D QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEK YILHPRGAIIGDTIVSGT+VPI MGNALPL+ Sbjct: 1 MAKHLYKTPIPSTRKGTIDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PEA (50S ribosomal protein L2, chloroplastic OS=Pisum sativum GN=rpl2 PE=3 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 6.497e-63 Identity = 117/131 (89.31%), Postives = 123/131 (93.89%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAIHL KTS+PSTRNGAV+SQVKSN RN LI GQH CGKGRN RGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRI+TIEYDPNRNA+ICLIHYGDGEKRYILHP+ AIIGDTIV GTEVPIKMGNALPL+ Sbjct: 1 MAIHLSKTSSPSTRNGAVNSQVKSNSRNRLISGQHHCGKGRNPRGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIITIEYDPNRNAHICLIHYGDGEKRYILHPK-AIIGDTIVYGTEVPIKMGNALPLT 130
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_IPOPU (50S ribosomal protein L2, chloroplastic OS=Ipomoea purpurea GN=rpl2 PE=3 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 1.890e-62 Identity = 115/131 (87.79%), Postives = 120/131 (91.60%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 M I LYKT TPSTRNG V+ QVKS NLIYGQHRCGKGRNARGIITA HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYG+GEKRYILHPRGAIIGD+IVSGTEV IK+GNALPL+ Sbjct: 1 MVIQLYKTYTPSTRNGTVNGQVKSTRGKNLIYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGNGEKRYILHPRGAIIGDSIVSGTEVSIKIGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_SORBI (50S ribosomal protein L2, chloroplastic OS=Sorghum bicolor GN=rpl2-A PE=3 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 2.469e-62 Identity = 114/128 (89.06%), Postives = 118/128 (92.19%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNAL 426 MA HLYKT PSTR G VD QVKSNPRN LI+G+HRCGKGRNARGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNAL Sbjct: 1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNKLIHGRHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNAL 128
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_WHEAT (50S ribosomal protein L2, chloroplastic OS=Triticum aestivum GN=rpl2-A PE=3 SV=2) HSP 1 Score: 224.172 bits (570), Expect = 8.219e-58 Identity = 109/131 (83.21%), Postives = 116/131 (88.55%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MA HLYKT PSTR G +D QVKSNPRNNLI+G+HRCGKGRN+RGIITA G KRLYRKIDFRRN+KDI GRIVTIE DPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+ Sbjct: 1 MAKHLYKTPIPSTRKGTLDRQVKSNPRNNLIHGRHRCGKGRNSRGIITASIEGEVIKRLYRKIDFRRNQKDISGRIVTIESDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131 The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bpback to top |