FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_MAIZE (50S ribosomal protein L2, chloroplastic OS=Zea mays GN=rpl2-A PE=2 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 1.309e-63
Identity = 115/131 (87.79%), Postives = 121/131 (92.37%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MA HLYKT  PSTR G VD QVKSNPRN LI+G+HRCGKGRNARGIITA HRGGGHKRLYRKIDFRRN+KDI GRI+TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:    1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNKLIHGRHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNQKDISGRIITIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_EPIVI (50S ribosomal protein L2, plastid OS=Epifagus virginiana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.917e-63
Identity = 115/131 (87.79%), Postives = 120/131 (91.60%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNG V SQVKSNPR NLIYGQH CGKGRN RGIIT  HRGGGHKRLYRKI F RNEK IYGRI+TIEYDPNRNAYICLIHYGDG+KRYILHPRGAIIGDT+VSGTEVPI +GNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGTVYSQVKSNPRKNLIYGQHHCGKGRNVRGIITTRHRGGGHKRLYRKISFIRNEKYIYGRIITIEYDPNRNAYICLIHYGDGDKRYILHPRGAIIGDTLVSGTEVPIIIGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ORYSJ (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.809e-63
Identity = 114/131 (87.02%), Postives = 121/131 (92.37%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MA HLYKT  PSTR G +D QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEK YILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:    1 MAKHLYKTPIPSTRKGTIDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ORYSI (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.809e-63
Identity = 114/131 (87.02%), Postives = 121/131 (92.37%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MA HLYKT  PSTR G +D QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEK YILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:    1 MAKHLYKTPIPSTRKGTIDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ORYSA (50S ribosomal protein L2, chloroplastic OS=Oryza sativa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.809e-63
Identity = 114/131 (87.02%), Postives = 121/131 (92.37%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MA HLYKT  PSTR G +D QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEK YILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:    1 MAKHLYKTPIPSTRKGTIDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ORYNI (50S ribosomal protein L2, chloroplastic OS=Oryza nivara GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.809e-63
Identity = 114/131 (87.02%), Postives = 121/131 (92.37%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MA HLYKT  PSTR G +D QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEK YILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:    1 MAKHLYKTPIPSTRKGTIDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PEA (50S ribosomal protein L2, chloroplastic OS=Pisum sativum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 6.497e-63
Identity = 117/131 (89.31%), Postives = 123/131 (93.89%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHL KTS+PSTRNGAV+SQVKSN RN LI GQH CGKGRN RGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRI+TIEYDPNRNA+ICLIHYGDGEKRYILHP+ AIIGDTIV GTEVPIKMGNALPL+
Sbjct:    1 MAIHLSKTSSPSTRNGAVNSQVKSNSRNRLISGQHHCGKGRNPRGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIITIEYDPNRNAHICLIHYGDGEKRYILHPK-AIIGDTIVYGTEVPIKMGNALPLT 130          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_IPOPU (50S ribosomal protein L2, chloroplastic OS=Ipomoea purpurea GN=rpl2 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.890e-62
Identity = 115/131 (87.79%), Postives = 120/131 (91.60%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            M I LYKT TPSTRNG V+ QVKS    NLIYGQHRCGKGRNARGIITA HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYG+GEKRYILHPRGAIIGD+IVSGTEV IK+GNALPL+
Sbjct:    1 MVIQLYKTYTPSTRNGTVNGQVKSTRGKNLIYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGNGEKRYILHPRGAIIGDSIVSGTEVSIKIGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_SORBI (50S ribosomal protein L2, chloroplastic OS=Sorghum bicolor GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.469e-62
Identity = 114/128 (89.06%), Postives = 118/128 (92.19%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNAL 426
            MA HLYKT  PSTR G VD QVKSNPRN LI+G+HRCGKGRNARGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNAL
Sbjct:    1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNKLIHGRHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNAL 128          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_WHEAT (50S ribosomal protein L2, chloroplastic OS=Triticum aestivum GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 8.219e-58
Identity = 109/131 (83.21%), Postives = 116/131 (88.55%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MA HLYKT  PSTR G +D QVKSNPRNNLI+G+HRCGKGRN+RGIITA   G   KRLYRKIDFRRN+KDI GRIVTIE DPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:    1 MAKHLYKTPIPSTRKGTLDRQVKSNPRNNLIHGRHRCGKGRNSRGIITASIEGEVIKRLYRKIDFRRNQKDISGRIVTIESDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_MAIZE1.309e-6387.7950S ribosomal protein L2, chloroplastic OS=Zea may... [more]
RK2_EPIVI2.917e-6387.7950S ribosomal protein L2, plastid OS=Epifagus virg... [more]
RK2_ORYSJ3.809e-6387.0250S ribosomal protein L2, chloroplastic OS=Oryza s... [more]
RK2_ORYSI3.809e-6387.0250S ribosomal protein L2, chloroplastic OS=Oryza s... [more]
RK2_ORYSA3.809e-6387.0250S ribosomal protein L2, chloroplastic OS=Oryza s... [more]
RK2_ORYNI3.809e-6387.0250S ribosomal protein L2, chloroplastic OS=Oryza n... [more]
RK2_PEA6.497e-6389.3150S ribosomal protein L2, chloroplastic OS=Pisum s... [more]
RK2_IPOPU1.890e-6287.7950S ribosomal protein L2, chloroplastic OS=Ipomoea... [more]
RK2_SORBI2.469e-6289.0650S ribosomal protein L2, chloroplastic OS=Sorghum... [more]
RK2_WHEAT8.219e-5883.2150S ribosomal protein L2, chloroplastic OS=Triticu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
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