FC876456

Overview
NameFC876456
Unique NameFC876456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10364 contig Ccv1_Contig10364:1..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA3_RAT (Protein disulfide-isomerase A3 OS=Rattus norvegicus GN=Pdia3 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEK 271
            VL+EFYAPWCGHCKNL P Y+++    + + ++V+A +DA    D+   Y V GFPT+ F P   K   ++Y GGR+L DF+S++  +
Sbjct:  397 VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA-NDVPSPYEVKGFPTIYFSPANKKLTPKKYEGGRELNDFISYLQRE 483          

HSP 2 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 277
            +LVEF+APWCGHCK LAP YE  AAA  L+  V +A +D     +   KYGVSG+PTLK F  G + G  Y G R  +  VS + ++ G
Sbjct:   48 MLVEFFAPWCGHCKRLAPEYE--AAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAG-AYDGPRTADGIVSHLKKQAG 133          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA3_MOUSE (Protein disulfide-isomerase A3 OS=Mus musculus GN=Pdia3 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEK 271
            VL+EFYAPWCGHCKNL P Y+++    + + ++V+A +DA    D+   Y V GFPT+ F P   K   ++Y GGR+L DF+S++  +
Sbjct:  397 VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA-NDVPSPYEVKGFPTIYFSPANKKLTPKKYEGGRELNDFISYLQRE 483          

HSP 2 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 277
            +LVEF+APWCGHCK LAP YE  AAA  L+  V +A +D     +   KYGVSG+PTLK F  G + G  Y G R  +  VS + ++ G
Sbjct:   48 MLVEFFAPWCGHCKRLAPEYE--AAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAG-AYDGPRTADGIVSHLKKQAG 133          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA3_BOVIN (Protein disulfide-isomerase A3 OS=Bos taurus GN=PDIA3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGGRDLEDFVSFINEK 271
            VL+EFYAPWCGHCKNL P Y+++      + ++V+A +DA    D+   Y V GFPT+ F P   K   ++Y GGR+L DF+S++  +
Sbjct:  397 VLIEFYAPWCGHCKNLEPKYKELGEKLRKDPNIVIAKMDATA-NDVPSPYEVRGFPTIYFSPANKKQNPKKYEGGRELSDFISYLKRE 483          

HSP 2 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 277
            +LVEF+APWCGHCK LAP YE  AAA  L+  V +A +D     +   KYGVSG+PTLK F  G + G  Y G R  +  VS + ++ G
Sbjct:   48 MLVEFFAPWCGHCKKLAPEYE--AAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEESG-AYDGPRTADGIVSHLKKQAG 133          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDI_RICCO (Protein disulfide-isomerase OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.822e-17
Identity = 60/193 (31.09%), Postives = 98/193 (50.78%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALED-DVVVANLDADK--YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG-TSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKK---AVFSKIERGVEVLEGSTARH---------GKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKS 541
            ++VEFYAPWCGHCK L P YEK A+     D  VV+A +DA++   K+LA +Y + GFPTLK    G K  +EY G R+ +    ++ ++ G  S + K    +   I      +V  F   SG+E +   +V  K+    E      A+H         G + +++ K + +   D+    +D L++ +++S
Sbjct:   52 IVVEFYAPWCGHCKKLRPEYEKAASILKSHDIPVVLAKVDANEEANKELATQYDIKGFPTLKILRNGGKSIQEYKGPREADGIAEYLKKQSGPASVEIKSTEAANTFIGDKKIFIVGVFPKFSGEEYENYMSVADKLRSDYEFGHTLDAKHLPQGESSVTGPV-VRLFKPFDELFVDFKDFNVDALEKFVEES 243          

HSP 2 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    2 GTRVLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAG 319
            G  VL+EFYAPWCGHCK LAP  ++VA ++  + D+V+A LDA      ++ + V G+PT+ +F   +   E+Y G R  +D +SFI +    +RD   Q  S  G
Sbjct:  394 GKNVLLEFYAPWCGHCKQLAPILDEVAVSYKSDADIVIAKLDATANDIPSDTFDVRGYPTV-YFRSASGKVEQYDGDRTKDDIISFIEK----NRDKAAQQESANG 494          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDI2_ARATH (Protein disulfide-isomerase 2 OS=Arabidopsis thaliana GN=At1g77510 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.822e-17
Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = 2
Query:   11 VLVEFYAPWCGHCKNLAPTYEKVAAAFALED-DVVVANLDA--DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG------TSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIER 406
            ++VEFYAPWCGHC+ LAP YEK A+  +  +  + +A +DA  +  K+ A +Y + GFPTLK    G K  ++Y G R+ E  V+++ ++ G       S D   ++     +VA     V  F   SGDE  +  +  E+
Sbjct:   49 IVVEFYAPWCGHCQKLAPEYEKAASELSSHNPPLALAKIDASEEANKEFANEYKIQGFPTLKILRNGGKSVQDYNGPREAEGIVTYLKKQSGPASVEIKSADSATEVVGEKNVVA-----VGVFPKLSGDEFDSFMALAEK 184          

HSP 2 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = 2
Query:    2 GTRVLVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 268
            G  VL+EFYAPWCGHC+ LAP  ++VA +F  +  V++A LDA      ++ + V GFPT+ +F   + +   Y G R  EDF++F+ +
Sbjct:  390 GKNVLIEFYAPWCGHCQKLAPILDEVALSFQNDPSVIIAKLDATANDIPSDTFDVKGFPTI-YFRSASGNVVVYEGDRTKEDFINFVEK 477          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA6_MESAU (Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 253
            LVEFYAPWCGHC+ L P ++K  AA AL+D V V  +DADK++ L  +YGV GFPT+K F       E+Y GGR  E  V
Sbjct:   47 LVEFYAPWCGHCQRLTPEWKK--AATALKDVVKVGAVDADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIV 124          

HSP 2 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAF--ALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 256
            +VEFYAPWCGHCKNL P +   A       +  V +A +DA   + LA +YG+ GFPT+K F KG     +Y GGR   D VS
Sbjct:  182 MVEFYAPWCGHCKNLEPEWATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIRGFPTIKIFQKGEAP-VDYDGGRTRSDIVS 263          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.514e-17
Identity = 51/135 (37.78%), Postives = 71/135 (52.59%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV--------SFINEKCG-------TSRDGKGQLTSTAGIVASLDALVKEFVAASGD 373
            LVEFYAPWCGHC+ L P ++K  AA AL+D V V  ++ADK++ L  +YGV GFPT+K F       E+Y GGR  E  V          + ++ G       + + G+G  +S   +V   D    + V  S D
Sbjct:   47 LVEFYAPWCGHCQRLTPEWKK--AASALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRQLVKDRLGGRSGGYSSGKQGRGDSSSKKDVVELTDDTFDKNVLDSED 179          

HSP 2 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAFALEDD----VVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 256
            +VEFYAPWCGHCKNL P  E  AAA  +++     V +A +DA   + LA +YG+ GFPT+K F KG +   +Y GGR   D VS
Sbjct:  182 MVEFYAPWCGHCKNLEP--EWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKG-ESPVDYDGGRTRSDIVS 263          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA6_PONAB (Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.514e-17
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 253
            LVEFYAPWCGHC+ L P ++K  AA AL+D V V  +DADK+  L  +YGV GFPT+K F       E+Y GGR  E  V
Sbjct:   47 LVEFYAPWCGHCQRLTPEWKK--AATALKDVVKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIV 124          

HSP 2 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAFALEDD----VVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 256
            +VEFYAPWCGHCKNL P  E  AAA  +++     V +A +DA   + LA +YG+ GFPT+K F KG +   +Y GGR   D VS
Sbjct:  182 MVEFYAPWCGHCKNLEP--EWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKG-ESPVDYDGGRTRSDIVS 263          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA6_MOUSE (Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 8.514e-17
Identity = 51/135 (37.78%), Postives = 71/135 (52.59%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV--------SFINEKCG-------TSRDGKGQLTSTAGIVASLDALVKEFVAASGD 373
            LVEFYAPWCGHC+ L P ++K  AA AL+D V V  ++ADK++ L  +YGV GFPT+K F       E+Y GGR  E  V          + ++ G       + + G+G  +S   +V   D    + V  S D
Sbjct:   47 LVEFYAPWCGHCQRLTPEWKK--AATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRQLVKDRLGGRSGGYSSGKQGRGDSSSKKDVVELTDDTFDKNVLDSED 179          

HSP 2 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAFALEDD----VVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 256
            +VEFYAPWCGHCKNL P  E  AAA  +++     V +A +DA   + LA +YG+ GFPT+K F KG +   +Y GGR   D VS
Sbjct:  182 MVEFYAPWCGHCKNLEP--EWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKG-ESPVDYDGGRTRSDIVS 263          
BLAST of FC876456 vs. ExPASy Swiss-Prot
Match: PDIA6_HUMAN (Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.514e-17
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAFALEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 253
            LVEFYAPWCGHC+ L P ++K  AA AL+D V V  +DADK+  L  +YGV GFPT+K F       E+Y GGR  E  V
Sbjct:   47 LVEFYAPWCGHCQRLTPEWKK--AATALKDVVKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIV 124          

HSP 2 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   14 LVEFYAPWCGHCKNLAPTYEKVAAAFALEDD----VVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 256
            +VEFYAPWCGHCKNL P  E  AAA  +++     V +A +DA   + LA +YG+ GFPT+K F KG +   +Y GGR   D VS
Sbjct:  182 MVEFYAPWCGHCKNLEP--EWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKG-ESPVDYDGGRTRSDIVS 263          
The following BLAST results are available for this feature:
BLAST of FC876456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PDIA3_RAT2.926e-1744.32Protein disulfide-isomerase A3 OS=Rattus norvegicu... [more]
PDIA3_MOUSE2.926e-1744.32Protein disulfide-isomerase A3 OS=Mus musculus GN=... [more]
PDIA3_BOVIN2.926e-1744.32Protein disulfide-isomerase A3 OS=Bos taurus GN=PD... [more]
PDI_RICCO3.822e-1731.09Protein disulfide-isomerase OS=Ricinus communis PE... [more]
PDI2_ARATH3.822e-1734.75Protein disulfide-isomerase 2 OS=Arabidopsis thali... [more]
PDIA6_MESAU4.991e-1753.75Protein disulfide-isomerase A6 OS=Mesocricetus aur... [more]
PDIA6_RAT8.514e-1737.78Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]
PDIA6_PONAB8.514e-1753.75Protein disulfide-isomerase A6 OS=Pongo abelii GN=... [more]
PDIA6_MOUSE8.514e-1737.78Protein disulfide-isomerase A6 OS=Mus musculus GN=... [more]
PDIA6_HUMAN8.514e-1753.75Protein disulfide-isomerase A6 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA03RM1 EHR Citrus clementina cDNA clone KN0AAN2CA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876456 ID=FC876456; Name=FC876456; organism=Citrus clementina; type=EST; length=558bp
CGGCACGAGGGTTTTGGTTGAATTTTATGCACCATGGTGTGGCCATTGCA
AAAACCTTGCGCCTACATATGAAAAGGTGGCAGCCGCATTTGCATTGGAA
GATGATGTAGTCGTTGCTAATTTGGATGCTGACAAATACAAGGATCTGGC
TGAGAAGTATGGAGTTAGTGGATTTCCTACATTGAAGTTCTTTCCAAAAG
GCAACAAAGATGGTGAGGAATATGGGGGTGGCAGAGATTTGGAAGACTTT
GTTTCTTTCATCAATGAAAAATGTGGCACCAGTCGTGATGGAAAAGGACA
ACTTACTTCAACGGCGGGTATAGTTGCGAGCTTAGATGCCTTGGTGAAGG
AATTTGTTGCTGCTAGCGGTGATGAGAAGAAGGCAGTCTTCTCAAAGATT
GAACGGGGAGTTGAGGTGCTTGAGGGTTCCACTGCCAGGCATGGGAAGAT
TTACTTGAAAGTTGCAAAGAACTATATGGACAAAGGGAGTGATTATGCGA
AAAAGGAAATTGATCGCCTCCAGCGTATGCTTGACAAGTCAATCAGCGCG
GCAAAAGC
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