FC876468

Overview
NameFC876468
Unique NameFC876468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: DRE1G_ORYSI (Dehydration-responsive element-binding protein 1G OS=Oryza sativa subsp. indica GN=DREB1G PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNF---------PELIFQEDDLRDV---SAASIRKKATEVGAKVDALQAA 532
            +KG+R R  G+WV E+REP+ + RIWLG++ T   AARA+D A   LRG +A LNF         P +    DD+R     +A + R    E  A  +   AA
Sbjct:   55 FKGVRRRNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAALALRGRAACLNFADSPRRLRVPPIGASHDDIRRAAAEAAEAFRPPPDESNAATEVAAAA 157          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: DRE1F_ORYSJ (Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica GN=DREB1F PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 2
Query:  260 YKGIRMRKWG-KWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGP-SARLNFPELIFQEDDLRDVSAASIRKKATE 499
            Y+G+R R  G +WV E+REP  ++RIWLG+Y TP  AARA+D A   LRG   A LNFP+        R  S   IR  A +
Sbjct:   47 YRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQ 128          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: DRE1F_ORYSI (Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. indica GN=DREB1F PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 2
Query:  260 YKGIRMRKWG-KWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGP-SARLNFPELIFQEDDLRDVSAASIRKKATE 499
            Y+G+R R  G +WV E+REP  ++RIWLG+Y TP  AARA+D A   LRG   A LNFP+        R  S   IR  A +
Sbjct:   47 YRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQ 128          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: DRE1E_ORYSJ (Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. japonica GN=DREB1E PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPE 433
            YKG+R R  G+WV E+REP+ + RIWLG++ T   AARA+D A   LRG +A LNF +
Sbjct:   53 YKGVRSRNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAAMALRGRAACLNFAD 110          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: DRE1E_ORYSI (Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. indica GN=DREB1E PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPE 433
            YKG+R R  G+WV E+REP+ + RIWLG++ T   AARA+D A   LRG +A LNF +
Sbjct:   53 YKGVRSRNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAAMALRGRAACLNFAD 110          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 439
            Y+G+R R WG++ AEIR+P K++R+WLG++ T   AARAYD A    RG  A+ NF  ++
Sbjct:   31 YRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIV 90          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            Y+G+R R WGK+ AEIR+P K  +R+WLG++ T   AA AYD A F +RG  A LNFP
Sbjct:  117 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFP 174          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRS-RIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            Y+G+R R WGK+ AEIR+  K   R+WLG++ T   AARAYD A + +RG +A LNFP
Sbjct:   15 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFP 72          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRS-RIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            Y+G+R R WGK+ AEIR+  K   R+WLG++ T   AARAYD A + +RG +A LNFP
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFP 77          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRS-RIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQE 448
            Y+G+R R WGK+ AEIR+  ++  R+WLG++ T  AAA AYD A F L+G  A LNFP  + +E
Sbjct:   82 YRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVEE 145          
The following BLAST results are available for this feature:
BLAST of FC876468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
DRE1G_ORYSI2.758e-1138.83Dehydration-responsive element-binding protein 1G ... [more]
DRE1F_ORYSJ2.758e-1146.34Dehydration-responsive element-binding protein 1F ... [more]
DRE1F_ORYSI2.758e-1146.34Dehydration-responsive element-binding protein 1F ... [more]
DRE1E_ORYSJ2.758e-1153.45Dehydration-responsive element-binding protein 1E ... [more]
DRE1E_ORYSI2.758e-1153.45Dehydration-responsive element-binding protein 1E ... [more]
ERF79_ARATH3.602e-1148.33Ethylene-responsive transcription factor 8 OS=Arab... [more]
EF101_ARATH3.602e-1155.17Ethylene-responsive transcription factor 2 OS=Arab... [more]
ERF96_ARATH4.704e-1153.45Ethylene-responsive transcription factor ERF096 OS... [more]
ERF97_ARATH6.144e-1153.45Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF94_ARATH6.144e-1150.00Ethylene-responsive transcription factor ERF094 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CB05RM1 EHR Citrus clementina cDNA clone KN0AAN2CB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876468 ID=FC876468; Name=FC876468; organism=Citrus clementina; type=EST; length=683bp
GCACGAGGCGGCACGAGGCACATATATAAGTGACTTGTACAGCATCTGCG
GCAATAAAAGTGGAGTCGCCTTAATTATTTTTGGGTTGGGCATCGGTATG
TGTCCCTCAGAACTCACAACAAGAAGAAAACTTTGATTAATTATCTACGA
AAACGACATGGAAGGAGGCGGGTGCTGCAGCACTTCGACTTCAACGAAAA
GCCCAGAGAAGCGGAAGCCAAGGCAGCAGCGGCAACACCAACAGCAGCAG
GAAAAGCCGTACAAGGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTCGC
TGAAATTAGAGAGCCTAACAAGAGATCCAGAATCTGGCTTGGTTCTTACA
CCACGCCTATAGCCGCCGCACGTGCCTACGACACGGCCGTCTTCTATCTC
CGGGGCCCTTCCGCTCGTCTTAACTTCCCCGAATTGATTTTCCAAGAAGA
CGATCTTCGAGACGTTTCTGCCGCTTCAATACGCAAGAAAGCTACCGAAG
TTGGCGCTAAGGTCGACGCTTTACAAGCTGCTCTCCATGCTGCTAATTCA
GAATCTGAATCCAATTCCAATTCCAATTTCAATTCCATTCGATTGTCCGA
GAAGCCTGATTTAAACAAGTTTCCAGAGAGTTCTGATGAAGATTGATAAC
ACAAAATACTTGCAAGCTCACAATTACCTACCC
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