FC876468

Overview
NameFC876468
Unique NameFC876468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: DRE2C_ARATH (Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL 436
            Y+G+R R+WGKWVAEIREP+  +R+WLG++++   AA AYD A   + G SARLN PE+
Sbjct:   72 YRGVRQRRWGKWVAEIREPDGGARLWLGTFSSSYEAALAYDEAAKAIYGQSARLNLPEI 130          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF24_ARATH (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  260 YKGIRMRK-WGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATEVGAKVDALQAAL 535
            Y+G+R RK   KWV+EIREP K +RIWLG+++TP  AA AYD A   L+G  A LNFP  +        +S A I+  A    A   A + A+
Sbjct:   15 YRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELNFPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAI 107          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            Y+G+RMR WGK+ AEIR+P +R +R+WLG++ T I AARAYD   F LRG  A LNFP
Sbjct:  137 YRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFP 194          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQE--DDLRDVSAASIRKKA 493
            ++G+R R+WG WV+EIR P  + R+WLG++ T  AAARAYD A   + G +A+ NFP +  +E  D ++DV++  +  K+
Sbjct:    7 FRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPVVKSEEGSDHVKDVNSPLMSPKS 86          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI--FQEDD---LRDVSAASIRKKATE 499
            Y+G+R R WGK+ AEIR+PN++ +R+WLG++ T I AA+AYD A F LRG  A +NFP  +  F++ D   L+  ++   R + TE
Sbjct:  145 YRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLEVANFKQQDNEILQPANSGRKRMRETE 230          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQED 451
            Y+G+R R WG++ AEIR+P K++R+WLG++ T   AARAYDTA    RG  A+ NFP  +   D
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFLELSD 88          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            Y+G+R R WG++ AEIR+P K+SR+WLG++ TP  AARAYD      RG  A+ NFP
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            YKGIR R WG+W AEIR+P K  R+WLG++ T   AARAYD     +RG  A+LNFP
Sbjct:   25 YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFP 81          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNF 427
            ++G+R R WGKW AEIR+P KR R+WLG+Y T   AA  YD A   LRGP A  NF
Sbjct:  122 FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            Y+G+R R WGK+ AEIR+PN++ +R+WLG++ T I AA+AYD A + LRG  A +NFP
Sbjct:  138 YRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFP 195          
The following BLAST results are available for this feature:
BLAST of FC876468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
DRE2C_ARATH7.754e-1455.93Dehydration-responsive element-binding protein 2C ... [more]
ERF24_ARATH1.323e-1344.09Ethylene-responsive transcription factor ERF024 OS... [more]
EF103_ARATH1.323e-1360.34Ethylene-responsive transcription factor 6 OS=Arab... [more]
SHN2_ARATH1.727e-1342.50Ethylene-responsive transcription factor SHINE 2 O... [more]
ERF5_TOBAC1.727e-1345.35Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF78_ARATH3.848e-1350.00Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF76_ARATH5.026e-1354.39Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF73_ARATH5.026e-1357.89Ethylene-responsive transcription factor ERF073 OS... [more]
CRF2_ARATH5.026e-1357.14Ethylene-responsive transcription factor CRF2 OS=A... [more]
ERF5_NICSY6.564e-1355.17Ethylene-responsive transcription factor 5 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CB05RM1 EHR Citrus clementina cDNA clone KN0AAN2CB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876468 ID=FC876468; Name=FC876468; organism=Citrus clementina; type=EST; length=683bp
GCACGAGGCGGCACGAGGCACATATATAAGTGACTTGTACAGCATCTGCG
GCAATAAAAGTGGAGTCGCCTTAATTATTTTTGGGTTGGGCATCGGTATG
TGTCCCTCAGAACTCACAACAAGAAGAAAACTTTGATTAATTATCTACGA
AAACGACATGGAAGGAGGCGGGTGCTGCAGCACTTCGACTTCAACGAAAA
GCCCAGAGAAGCGGAAGCCAAGGCAGCAGCGGCAACACCAACAGCAGCAG
GAAAAGCCGTACAAGGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTCGC
TGAAATTAGAGAGCCTAACAAGAGATCCAGAATCTGGCTTGGTTCTTACA
CCACGCCTATAGCCGCCGCACGTGCCTACGACACGGCCGTCTTCTATCTC
CGGGGCCCTTCCGCTCGTCTTAACTTCCCCGAATTGATTTTCCAAGAAGA
CGATCTTCGAGACGTTTCTGCCGCTTCAATACGCAAGAAAGCTACCGAAG
TTGGCGCTAAGGTCGACGCTTTACAAGCTGCTCTCCATGCTGCTAATTCA
GAATCTGAATCCAATTCCAATTCCAATTTCAATTCCATTCGATTGTCCGA
GAAGCCTGATTTAAACAAGTTTCCAGAGAGTTCTGATGAAGATTGATAAC
ACAAAATACTTGCAAGCTCACAATTACCTACCC
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