FC876468

Overview
NameFC876468
Unique NameFC876468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10367 contig Ccv1_Contig10367:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPE 433
            ++GIR R WGKW AEIR+P K  R+WLG++ +   AARAYD     +RG  A++NFPE
Sbjct:  120 FRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPE 177          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            Y+G+R R WGK+ AEIR+P K+ SRIWLG++ + I AARAYD A F LRG  A LNFP
Sbjct:  107 YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFP 164          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            Y+G+R R WGK+ AEIR+P K+ SRIWLG++ + + AARAYD A F LRG  A LNFP
Sbjct:  110 YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFP 167          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNF 427
            Y+G+R R WGKW AEIR+P +R RIWLG++ T   AA  YD A   LRGP A  NF
Sbjct:  117 YRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNF 172          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            ++G+R R WG+W AEIR+P +  R+WLG+Y TP  AA  YD A   L+GP A  NFP
Sbjct:   98 FRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFP 154          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNF--PELIFQEDDLRDVSA 472
            Y+G+R R WGK+ AEIR+P+ R+RIWLG++ T   AA AYD A  +L+GP A  NF  P       DL+ VSA
Sbjct:  105 YRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPPTPTPVIDLQTVSA 177          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            Y+G+R R WG++ AEIR+P K++R+WLG++ TP  AA AYD A  +LRG  A+ NFP
Sbjct:   12 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLN 424
            ++G+R R WGKWVAEIREPN+ +R+WLG++ T + AA AYD A   L G  A+LN
Sbjct:   34 FRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLN 88          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            ++G+R R WG++ AEIR+P K++R+WLG++ T   AARAYDTA    RG  A+ NFP
Sbjct:   33 FRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF27_ARATH (Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana GN=ERF027 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 41/83 (49.40%), Postives = 47/83 (56.63%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATEVGA 508
            Y+GIR R  GKWV+EIREP K +RIWLG+Y     AA AYD A   L+G  A LNFP  +         SAA IR  A    A
Sbjct:   19 YRGIRCRS-GKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAA 100          
The following BLAST results are available for this feature:
BLAST of FC876468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
ERF1_ORYSJ6.564e-1353.45Ethylene-responsive transcription factor 1 OS=Oryz... [more]
EF107_ARATH6.564e-1362.07Ethylene-responsive transcription factor ERF107 OS... [more]
EF106_ARATH6.564e-1360.34Ethylene-responsive transcription factor ERF106 OS... [more]
CRF4_ARATH6.564e-1357.14Ethylene-responsive transcription factor CRF4 OS=A... [more]
PTI6_SOLLC8.573e-1352.63Pathogenesis-related genes transcriptional activat... [more]
CRF6_ARATH8.573e-1350.68Ethylene-responsive transcription factor CRF6 OS=A... [more]
ERF81_ARATH1.120e-1254.39Ethylene-responsive transcription factor 12 OS=Ara... [more]
DRE2G_ARATH1.120e-1256.36Dehydration-responsive element-binding protein 2G ... [more]
ERF80_ARATH1.462e-1252.63Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF27_ARATH1.462e-1249.40Ethylene-responsive transcription factor ERF027 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CB05RM1 EHR Citrus clementina cDNA clone KN0AAN2CB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876468 ID=FC876468; Name=FC876468; organism=Citrus clementina; type=EST; length=683bp
GCACGAGGCGGCACGAGGCACATATATAAGTGACTTGTACAGCATCTGCG
GCAATAAAAGTGGAGTCGCCTTAATTATTTTTGGGTTGGGCATCGGTATG
TGTCCCTCAGAACTCACAACAAGAAGAAAACTTTGATTAATTATCTACGA
AAACGACATGGAAGGAGGCGGGTGCTGCAGCACTTCGACTTCAACGAAAA
GCCCAGAGAAGCGGAAGCCAAGGCAGCAGCGGCAACACCAACAGCAGCAG
GAAAAGCCGTACAAGGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTCGC
TGAAATTAGAGAGCCTAACAAGAGATCCAGAATCTGGCTTGGTTCTTACA
CCACGCCTATAGCCGCCGCACGTGCCTACGACACGGCCGTCTTCTATCTC
CGGGGCCCTTCCGCTCGTCTTAACTTCCCCGAATTGATTTTCCAAGAAGA
CGATCTTCGAGACGTTTCTGCCGCTTCAATACGCAAGAAAGCTACCGAAG
TTGGCGCTAAGGTCGACGCTTTACAAGCTGCTCTCCATGCTGCTAATTCA
GAATCTGAATCCAATTCCAATTCCAATTTCAATTCCATTCGATTGTCCGA
GAAGCCTGATTTAAACAAGTTTCCAGAGAGTTCTGATGAAGATTGATAAC
ACAAAATACTTGCAAGCTCACAATTACCTACCC
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